FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033093 through 18771 annotations produced 1 hits

(CG3270):

Annotation Number : CG3270
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033093
Gbrowse : chr2R:2580944-2582692 (+) // 100.0 //
Probeset : 1625434_at
Accessions : protein= NP_610228;, nucleotide= NM_136384;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0033093.
TRiP has 2 RNAi stocks for FBgn0033093 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033093 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	421 ± 9	4 of 4	2.90	Up
Head	130 ± 11	4 of 4	0.90	None
Eye	17 ± 2	4 of 4	0.12	Down
Thoracicoabdominal ganglion	600 ± 13	4 of 4	4.10	Up
Salivary gland	5 ± 3	0 of 4	0.04	Down
Crop	4 ± 1	0 of 4	0.00	Down
Midgut	92 ± 2	4 of 4	0.60	Down
Tubule	6215 ± 119	4 of 4	42.30	Up
Hindgut	76 ± 11	4 of 4	0.50	Down
Heart	27 ± 3	4 of 4	0.19	Down
Fat body	34 ± 24	1 of 4	0.23	Down
Ovary	3 ± 2	0 of 4	0.00	Down
Testis	21 ± 1	4 of 4	0.10	Down
Male accessory glands	5 ± 2	0 of 4	0.00	Down
Virgin spermatheca	48 ± 3	3 of 4	0.33	Down
Mated spermatheca	13 ± 3	0 of 4	0.09	Down
Adult carcass	32 ± 4	1 of 4	0.20	Down
Larval CNS	22 ± 5	4 of 4	0.15	Down
Larval Salivary gland	9 ± 1	0 of 4	0.07	Down
Larval midgut	44 ± 4	2 of 4	0.30	Down
Larval tubule	5101 ± 114	4 of 4	34.70	Up
Larval hindgut	23 ± 4	2 of 4	0.16	Down
Larval fat body	28 ± 3	2 of 4	0.20	Down
Larval trachea	5 ± 3	0 of 4	0.04	Down
Larval carcass	4 ± 1	0 of 4	0.03	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	147 ± 13	4 of 4

Looking for FBgn0033093. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720