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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033100 through 18771 annotations produced 1 hits



(CG3420):

Annotation Number : CG3420
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033100
Gbrowse : chr2R:2643794-2644525 (-) // 100.0 //
Probeset : 1639763_at
Accessions : protein= NP_610234;, nucleotide= NM_136390;
Pathway : 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation
Interpro : "0051537 // 2 iron
FlyMine data for FBgn0033100.
BDGP gene expression has embryonic in situ data for CG3420: 10 pix of staining in 11 body parts.
BioGrid reports that CG3420 interacts with CG9911 .
VDRC has 2 RNAi stocks for FBgn0033100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 ± 74 of 4 0.90None
Head267 ± 74 of 4 0.90None
Eye183 ± 34 of 4 0.60Down
Thoracicoabdominal ganglion400 ± 164 of 4 1.30Up
Salivary gland283 ± 104 of 4 0.92None
Crop244 ± 94 of 4 0.80None
Midgut331 ± 64 of 4 1.10None
Tubule295 ± 54 of 4 1.00Down
Hindgut270 ± 94 of 4 0.90None
Heart310 ± 114 of 4 1.01None
Fat body361 ± 254 of 4 1.18None
Ovary415 ± 174 of 4 1.40Up
Testis101 ± 24 of 4 0.30Down
Male accessory glands182 ± 84 of 4 0.60Down
Virgin spermatheca185 ± 314 of 4 0.61Down
Mated spermatheca220 ± 134 of 4 0.72Down
Adult carcass263 ± 114 of 4 0.90None
Larval CNS266 ± 324 of 4 0.87None
Larval Salivary gland320 ± 184 of 4 1.04None
Larval midgut211 ± 54 of 4 0.69Down
Larval tubule368 ± 134 of 4 1.20None
Larval hindgut254 ± 94 of 4 0.83None
Larval fat body274 ± 234 of 4 0.90None
Larval trachea385 ± 254 of 4 1.26Up
Larval carcass193 ± 184 of 4 0.63Down
S2 cells (growing)251 ± 74 of 4 0.82None
Whole fly306 ± 244 of 4

Looking for FBgn0033100. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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