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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033101 through 18771 annotations produced 1 hits



(CG9436):

Annotation Number : CG9436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033101
Gbrowse : chr2R:2645105-2646391 (-) // 100.0 //
Probeset : 1633870_at
Accessions : protein= NP_610235;, nucleotide= NM_136391;
Interpro : 0004032 // aldehyde reductase activity // inferred from sequence or structural similarity /// 0004032 // aldehyde reduct
FlyMine data for FBgn0033101.
BDGP gene expression has embryonic in situ data for CG9436: 10 pix of staining in 4 body parts.
Homophila reports that CG9436 is a close match (3e-59) to human gene (NP_005980), a gene associated with .
BioGrid reports that CG9436 interacts with CG9776 .
VDRC has 3 RNAi stocks for FBgn0033101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 ± 44 of 4 0.40Down
Head450 ± 204 of 4 1.80Up
Eye225 ± 194 of 4 0.90None
Thoracicoabdominal ganglion296 ± 64 of 4 1.20None
Salivary gland49 ± 101 of 4 0.20Down
Crop170 ± 104 of 4 0.70Down
Midgut484 ± 144 of 4 1.90Up
Tubule1424 ± 374 of 4 5.70Up
Hindgut384 ± 154 of 4 1.50Up
Heart593 ± 334 of 4 2.37Up
Fat body910 ± 724 of 4 3.63Up
Ovary261 ± 104 of 4 1.00None
Testis23 ± 32 of 4 0.10Down
Male accessory glands74 ± 134 of 4 0.30Down
Virgin spermatheca586 ± 444 of 4 2.34Up
Mated spermatheca560 ± 194 of 4 2.24Up
Adult carcass435 ± 164 of 4 1.70Up
Larval CNS72 ± 134 of 4 0.29Down
Larval Salivary gland64 ± 54 of 4 0.26Down
Larval midgut287 ± 94 of 4 1.15None
Larval tubule1400 ± 654 of 4 5.60Up
Larval hindgut263 ± 134 of 4 1.05None
Larval fat body57 ± 44 of 4 0.20Down
Larval trachea274 ± 244 of 4 1.09None
Larval carcass265 ± 304 of 4 1.06None
S2 cells (growing)243 ± 54 of 4 0.97None
Whole fly250 ± 154 of 4

Looking for FBgn0033101. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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