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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033117 through 18771 annotations produced 1 hits



(CG3358):

Annotation Number : CG3358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033117
Gbrowse : chr2R:2810875-2812186 (+) // 100.0 //
Probeset : 1635111_s_at
Accessions : protein= NP_610248; /// NP_724515;, nucleotide= NM_136404; /// NM_165497;
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0016888 // endodeoxyribonuclease activity
FlyMine data for FBgn0033117.
BDGP gene expression has embryonic in situ data for CG3358: 4 pix of staining in 1 body parts.
BioGrid reports that CG3358 interacts with CG5670 CG7655 .
VDRC has 2 RNAi stocks for FBgn0033117 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 14 of 4 0.80None
Head53 ± 14 of 4 0.60Down
Eye73 ± 34 of 4 0.85Down
Thoracicoabdominal ganglion67 ± 24 of 4 0.80Down
Salivary gland107 ± 104 of 4 1.25None
Crop66 ± 24 of 4 0.80Down
Midgut59 ± 14 of 4 0.70Down
Tubule64 ± 34 of 4 0.70Down
Hindgut54 ± 34 of 4 0.60Down
Heart74 ± 34 of 4 0.86None
Fat body67 ± 44 of 4 0.78Down
Ovary149 ± 74 of 4 1.70Up
Testis19 ± 14 of 4 0.20Down
Male accessory glands170 ± 54 of 4 2.00Up
Virgin spermatheca88 ± 14 of 4 1.02None
Mated spermatheca106 ± 54 of 4 1.23Up
Adult carcass69 ± 24 of 4 0.80Down
Larval CNS98 ± 94 of 4 1.14None
Larval Salivary gland85 ± 34 of 4 0.99None
Larval midgut40 ± 14 of 4 0.47Down
Larval tubule61 ± 54 of 4 0.70Down
Larval hindgut63 ± 14 of 4 0.74Down
Larval fat body66 ± 54 of 4 0.80Down
Larval trachea146 ± 84 of 4 1.69Up
Larval carcass67 ± 64 of 4 0.79None
S2 cells (growing)186 ± 54 of 4 2.15Up
Whole fly86 ± 34 of 4

Looking for FBgn0033117. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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