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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033124 through 18771 annotations produced 1 hits

tetraspanin 42E (Tsp42Ec):

Annotation Number : CG12847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033124
Gbrowse : chr2R:2893951-2896127 (+) // 100.0 //
Probeset : 1630051_at
Accessions : protein= NP_523629;, nucleotide= NM_078905;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033124.
BDGP gene expression has embryonic in situ data for Tsp42Ec: 14 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0033124 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head7 10 of 4 0.10Down
Eye11 11 of 4 0.07Down
Thoracicoabdominal ganglion7 10 of 4 0.10Down
Salivary gland14 60 of 4 0.09Down
Crop17 20 of 4 0.10Down
Midgut2352 274 of 415.50Up
Tubule41 04 of 4 0.30Down
Hindgut26 03 of 4 0.20Down
Heart6 11 of 4 0.04Down
Fat body8 40 of 4 0.06Down
Ovary1 00 of 4 0.00Down
Testis5 10 of 4 0.00Down
Male accessory glands13 20 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.04Down
Mated spermatheca9 10 of 4 0.07Down
Adult carcass9 30 of 4 0.10Down
Larval CNS4 30 of 4 0.03Down
Larval Salivary gland7 20 of 4 0.05Down
Larval midgut2643 3324 of 417.41Up
Larval tubule20 13 of 4 0.10Down
Larval hindgut15 02 of 4 0.10Down
Larval fat body12 21 of 4 0.10Down
Larval trachea9 22 of 4 0.07Down
Larval carcass8 11 of 4 0.06Down
S2 cells (growing)10 10 of 4 0.07Down
Whole fly151 334 of 4

Looking for FBgn0033124. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime