FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033130 through 18771 annotations produced 1 hits

tetraspanin 42E (Tsp42Ei):

Annotation Number : CG12843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033130
Gbrowse : chr2R:2922631-2924459 (+) // 99.69 //
Probeset : 1623094_at
Accessions : protein= NP_523635;, nucleotide= NM_078911;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033130.
BDGP gene expression has embryonic in situ data for Tsp42Ei: 15 pix of staining in 3 body parts.
Homophila reports that CG12843 is a close match (1e-11) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
VDRC has 2 RNAi stocks for FBgn0033130 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.10	Down
Head	155 ± 6	4 of 4	1.90	Up
Eye	95 ± 9	4 of 4	1.20	None
Thoracicoabdominal ganglion	13 ± 4	2 of 4	0.20	Down
Salivary gland	180 ± 6	4 of 4	2.26	Up
Crop	863 ± 11	4 of 4	10.80	Up
Midgut	90 ± 8	4 of 4	1.10	None
Tubule	30 ± 4	3 of 4	0.40	Down
Hindgut	274 ± 5	4 of 4	3.40	Up
Heart	157 ± 8	4 of 4	1.98	Up
Fat body	19 ± 1	3 of 4	0.25	Down
Ovary	7 ± 1	1 of 4	0.10	Down
Testis	80 ± 7	4 of 4	1.00	None
Male accessory glands	66 ± 7	4 of 4	0.80	None
Virgin spermatheca	56 ± 6	4 of 4	0.71	Down
Mated spermatheca	124 ± 21	4 of 4	1.56	None
Adult carcass	257 ± 9	4 of 4	3.20	Up
Larval CNS	3 ± 2	0 of 4	0.04	Down
Larval Salivary gland	16 ± 2	4 of 4	0.21	Down
Larval midgut	41 ± 5	3 of 4	0.52	Down
Larval tubule	26 ± 1	4 of 4	0.30	Down
Larval hindgut	149 ± 8	4 of 4	1.87	Up
Larval fat body	51 ± 10	4 of 4	0.60	None
Larval trachea	18 ± 5	4 of 4	0.23	Down
Larval carcass	374 ± 15	4 of 4	4.69	Up
S2 cells (growing)	4 ± 2	0 of 4	0.05	Down
Whole fly	79 ± 3	4 of 4

Looking for FBgn0033130. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720