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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033133 through 18771 annotations produced 1 hits



tetraspanin 42E (Tsp42Ek):

Annotation Number : CG12841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033133
Gbrowse : chr2R:2930536-2932036 (+) // 100.0 //
Probeset : 1630920_at
Accessions : protein= NP_523637;, nucleotide= NM_078913;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for FBgn0033133.
BioGrid reports that CG12841 interacts with CG3998 .
VDRC has 3 RNAi stocks for FBgn0033133 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 34 of 4 9.10Up
Head29 ± 24 of 4 3.70Up
Eye56 ± 64 of 4 7.02Up
Thoracicoabdominal ganglion151 ± 74 of 418.70Up
Salivary gland18 ± 91 of 4 2.23None
Crop11 ± 32 of 4 1.50None
Midgut23 ± 41 of 4 2.90Up
Tubule3 ± 00 of 4 0.50Down
Hindgut23 ± 14 of 4 2.90Up
Heart86 ± 104 of 410.68Up
Fat body8 ± 30 of 4 1.01None
Ovary1 ± 00 of 4 0.20Down
Testis3 ± 10 of 4 0.40None
Male accessory glands17 ± 23 of 4 2.20Up
Virgin spermatheca4 ± 10 of 4 0.57None
Mated spermatheca4 ± 10 of 4 0.56None
Adult carcass15 ± 31 of 4 1.90None
Larval CNS9 ± 14 of 4 1.22None
Larval Salivary gland35 ± 44 of 4 4.35Up
Larval midgut15 ± 22 of 4 1.97None
Larval tubule38 ± 64 of 4 4.80Up
Larval hindgut105 ± 94 of 412.98Up
Larval fat body4641 ± 5604 of 4573.00Up
Larval trachea126 ± 224 of 415.60Up
Larval carcass843 ± 434 of 4104.12Up
S2 cells (growing)1 ± 00 of 4 0.24Down
Whole fly8 ± 13 of 4

Looking for FBgn0033133. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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