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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033134 through 18771 annotations produced 1 hits

Tetraspanin at 42El (Tsp42El):

Annotation Number : CG12840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033134
Gbrowse : chr2R:2933277-2936050 (+) // 100.0 //
Probeset : 1635370_at
Accessions : protein= NP_523638;, nucleotide= NM_078914;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033134.
BDGP gene expression has embryonic in situ data for Tsp42El: 14 pix of staining in 5 body parts.
BioGrid reports that CG12840 interacts with CG8264 CG5094 .
VDRC has 2 RNAi stocks for FBgn0033134 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 0.20Down
Head333 214 of 4 3.20Up
Eye135 24 of 4 1.29Up
Thoracicoabdominal ganglion43 34 of 4 0.40Down
Salivary gland291 164 of 4 2.79Up
Crop1147 294 of 410.90Up
Midgut121 84 of 4 1.20None
Tubule51 74 of 4 0.50Down
Hindgut612 124 of 4 5.80Up
Heart2232 574 of 421.30Up
Fat body186 354 of 4 1.78Up
Ovary11 24 of 4 0.10Down
Testis43 14 of 4 0.40Down
Male accessory glands35 44 of 4 0.30Down
Virgin spermatheca200 84 of 4 1.91Up
Mated spermatheca400 614 of 4 3.82Up
Adult carcass381 274 of 4 3.60Up
Larval CNS93 274 of 4 0.90None
Larval Salivary gland446 334 of 4 4.26Up
Larval midgut97 84 of 4 0.93None
Larval tubule276 174 of 4 2.60Up
Larval hindgut829 274 of 4 7.91Up
Larval fat body556 424 of 4 5.30Up
Larval trachea815 1134 of 4 7.78Up
Larval carcass613 184 of 4 5.85Up
S2 cells (growing)139 104 of 4 1.34Up
Whole fly104 84 of 4

Looking for FBgn0033134. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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