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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033135 through 18771 annotations produced 1 hits



tetraspanin 42E (Tsp42En):

Annotation Number : CG12839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033135
Gbrowse : chr2R:2940278-2941548 (+) // 100.0 //
Probeset : 1627785_at
Accessions : protein= NP_523640;, nucleotide= NM_078916;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033135.
BDGP gene expression has embryonic in situ data for Tsp42En: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033135 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 04 of 4 0.70Down
Head42 ± 64 of 4 2.70Up
Eye14 ± 33 of 4 0.90None
Thoracicoabdominal ganglion15 ± 12 of 4 1.00None
Salivary gland8 ± 30 of 4 0.55None
Crop49 ± 44 of 4 3.10Up
Midgut9 ± 10 of 4 0.60Down
Tubule7 ± 00 of 4 0.50Down
Hindgut48 ± 24 of 4 3.10Up
Heart290 ± 54 of 418.20Up
Fat body15 ± 50 of 4 0.95None
Ovary2 ± 00 of 4 0.20Down
Testis6 ± 11 of 4 0.40Down
Male accessory glands9 ± 30 of 4 0.60None
Virgin spermatheca21 ± 21 of 4 1.35None
Mated spermatheca24 ± 24 of 4 1.52None
Adult carcass39 ± 44 of 4 2.40Up
Larval CNS8 ± 32 of 4 0.53Down
Larval Salivary gland4 ± 10 of 4 0.30Down
Larval midgut4 ± 10 of 4 0.31Down
Larval tubule8 ± 20 of 4 0.50Down
Larval hindgut9 ± 31 of 4 0.56None
Larval fat body5 ± 20 of 4 0.30Down
Larval trachea7 ± 60 of 4 0.49None
Larval carcass20 ± 12 of 4 1.29None
S2 cells (growing)5 ± 00 of 4 0.36Down
Whole fly16 ± 14 of 4

Looking for FBgn0033135. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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