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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033141 through 18771 annotations produced 1 hits



(CG12831):

Annotation Number : CG12831
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033141
Gbrowse : chr2R:2960665-2961668 (-) // 100.0 //
Probeset : 1640921_at
Accessions : protein= NP_610258;, nucleotide= NM_136414;
FlyMine data for FBgn0033141.
VDRC has 2 RNAi stocks for FBgn0033141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.10Down
Head8 10 of 4 0.20Down
Eye5 00 of 4 0.15Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland16 41 of 4 0.46Down
Crop6 11 of 4 0.20Down
Midgut4 20 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart5 01 of 4 0.17Down
Fat body5 31 of 4 0.16Down
Ovary1 00 of 4 0.10Down
Testis520 214 of 414.80Up
Male accessory glands7 20 of 4 0.20Down
Virgin spermatheca5 11 of 4 0.15Down
Mated spermatheca7 00 of 4 0.21Down
Adult carcass8 10 of 4 0.20Down
Larval CNS3 30 of 4 0.09Down
Larval Salivary gland11 32 of 4 0.33Down
Larval midgut8 10 of 4 0.24Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut4 10 of 4 0.13Down
Larval fat body70 353 of 4 2.00None
Larval trachea5 41 of 4 0.15Down
Larval carcass5 00 of 4 0.16Down
S2 cells (growing)5 00 of 4 0.16Down
Whole fly35 24 of 4

Looking for FBgn0033141. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime