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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033153 through 18771 annotations produced 1 hits

Gadd45 (Gadd45):

Annotation Number : CG11086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033153
Gbrowse : chr2R:3136667-3137508 (+) // 100.0 //
Probeset : 1625139_at
Accessions : protein= NP_610264;, nucleotide= NM_136420;
Pathway : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0033153.
BioGrid reports that CG11086 interacts with CG9310 CG11121 CG2144 CG7911 CG9573 .
TRiP has 1 RNAi stocks for FBgn0033153 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033153 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 24 of 4 2.30Up
Head17 20 of 4 0.90None
Eye22 23 of 4 1.16None
Thoracicoabdominal ganglion27 24 of 4 1.50None
Salivary gland36 22 of 4 1.91Up
Crop26 12 of 4 1.40Up
Midgut48 73 of 4 2.50Up
Tubule25 32 of 4 1.30Up
Hindgut83 84 of 4 4.30Up
Heart81 224 of 4 4.24None
Fat body8 60 of 4 0.45Down
Ovary14 12 of 4 0.80None
Testis8 11 of 4 0.50Down
Male accessory glands17 41 of 4 0.90None
Virgin spermatheca2 00 of 4 0.12Down
Mated spermatheca4 10 of 4 0.21Down
Adult carcass24 10 of 4 1.20None
Larval CNS6 30 of 4 0.32Down
Larval Salivary gland13 30 of 4 0.71None
Larval midgut22 61 of 4 1.20None
Larval tubule112 124 of 4 5.90Up
Larval hindgut55 84 of 4 2.91Up
Larval fat body52 64 of 4 2.70Up
Larval trachea68 173 of 4 3.56Up
Larval carcass60 104 of 4 3.18Up
S2 cells (growing)64 34 of 4 3.34Up
Whole fly19 23 of 4

Looking for FBgn0033153. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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