FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033153 through 18771 annotations produced 1 hits

Gadd45 (Gadd45):

Annotation Number : CG11086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033153
Gbrowse : chr2R:3136667-3137508 (+) // 100.0 //
Probeset : 1625139_at
Accessions : protein= NP_610264;, nucleotide= NM_136420;
Pathway : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0033153.
BioGrid reports that CG11086 interacts with CG9310 CG11121 CG2144 CG7911 CG9573 .
TRiP has 1 RNAi stocks for FBgn0033153 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033153 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	43 ± 2	4 of 4	2.30	Up
Head	17 ± 2	0 of 4	0.90	None
Eye	22 ± 2	3 of 4	1.16	None
Thoracicoabdominal ganglion	27 ± 2	4 of 4	1.50	None
Salivary gland	36 ± 2	2 of 4	1.91	Up
Crop	26 ± 1	2 of 4	1.40	Up
Midgut	48 ± 7	3 of 4	2.50	Up
Tubule	25 ± 3	2 of 4	1.30	Up
Hindgut	83 ± 8	4 of 4	4.30	Up
Heart	81 ± 22	4 of 4	4.24	None
Fat body	8 ± 6	0 of 4	0.45	Down
Ovary	14 ± 1	2 of 4	0.80	None
Testis	8 ± 1	1 of 4	0.50	Down
Male accessory glands	17 ± 4	1 of 4	0.90	None
Virgin spermatheca	2 ± 0	0 of 4	0.12	Down
Mated spermatheca	4 ± 1	0 of 4	0.21	Down
Adult carcass	24 ± 1	0 of 4	1.20	None
Larval CNS	6 ± 3	0 of 4	0.32	Down
Larval Salivary gland	13 ± 3	0 of 4	0.71	None
Larval midgut	22 ± 6	1 of 4	1.20	None
Larval tubule	112 ± 12	4 of 4	5.90	Up
Larval hindgut	55 ± 8	4 of 4	2.91	Up
Larval fat body	52 ± 6	4 of 4	2.70	Up
Larval trachea	68 ± 17	3 of 4	3.56	Up
Larval carcass	60 ± 10	4 of 4	3.18	Up
S2 cells (growing)	64 ± 3	4 of 4	3.34	Up
Whole fly	19 ± 2	3 of 4

Looking for FBgn0033153. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720