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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033154 through 18771 annotations produced 1 hits



(CG1850):

Annotation Number : CG1850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033154
Gbrowse : chr2R:3146597-3148756 (-) // 100.0 //
Probeset : 1623576_at
Accessions : protein= NP_610265;, nucleotide= NM_136421;
FlyMine data for FBgn0033154.
BDGP gene expression has embryonic in situ data for CG1850: 4 pix of staining in 1 body parts.
BioGrid reports that CG1850 interacts with CG6483 CG5099 CG6945 CG8368 CG8590 CG8831 CG8942 .
VDRC has 3 RNAi stocks for FBgn0033154 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head2 ± 10 of 4 0.90None
Eye6 ± 21 of 4 2.02None
Thoracicoabdominal ganglion1 ± 00 of 4 0.60None
Salivary gland20 ± 40 of 4 6.43Up
Crop6 ± 10 of 4 2.20None
Midgut3 ± 10 of 4 1.10None
Tubule3 ± 10 of 4 1.20None
Hindgut2 ± 10 of 4 0.60None
Heart2 ± 10 of 4 0.84None
Fat body5 ± 30 of 4 1.73None
Ovary2 ± 10 of 4 0.70None
Testis2 ± 00 of 4 0.70None
Male accessory glands7 ± 40 of 4 2.50None
Virgin spermatheca1 ± 00 of 4 0.41None
Mated spermatheca4 ± 20 of 4 1.54None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS2 ± 10 of 4 0.63None
Larval Salivary gland7 ± 30 of 4 2.44None
Larval midgut5 ± 20 of 4 1.67None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.67None
Larval fat body11 ± 30 of 4 3.60None
Larval trachea4 ± 40 of 4 1.52None
Larval carcass2 ± 00 of 4 0.72None
S2 cells (growing)1 ± 00 of 4 0.47None
Whole fly3 ± 10 of 4

Looking for FBgn0033154. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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