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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033159 through 18771 annotations produced 3 hits


Down syndrome cell adhesion molecule (Dscam):

Annotation Number : CG17800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033159
Gbrowse : chr2R:3207058-3269374 (-) // 100.0 //
Probeset : 1637619_s_at
Accessions : protein= NP_001036476; /// NP_001036477; /// NP_001036478; /// NP_001036479; /// NP_001036480; /// NP_001036481; /// NP_001036482; /// NP_001036483; /// NP_001036484; /// NP_001036485; /// NP_001036486; /// NP_001036487; /// NP_001036488; /// NP_001036489; /// NP_001036490; /// NP_001036491; /// NP_001036492; /// NP_001036493; /// NP_001036494; /// NP_001036495; /// NP_001036496; /// NP_001036497; /// NP_001036498; /// NP_001036499; /// NP_001036500; /// NP_001036501; /// NP_001036502; /// NP_001036503; /// NP_001036504; /// NP_001036505; /// NP_001036506; /// NP_001036507; /// NP_001036508; /// NP_001036509; /// NP_001036510; /// NP_001036511; /// NP_001036512; /// NP_001036513; /// NP_001036514; /// NP_001036515; /// NP_001036516; /// NP_001036517; /// NP_001036518; /// NP_001036519; /// NP_001036520; /// NP_001036521; /// NP_001036522; /// NP_001036523; /// NP_001036524; /// NP_001036525; /// NP_001036526; /// NP_001036527; /// NP_001036528; /// NP_001036529; /// NP_001036530; /// NP_523649; /// NP_724542; /// NP_724543; /// NP_995769;, nucleotide= NM_001043011; /// NM_001043012; /// NM_001043013; /// NM_001043014; /// NM_001043015; /// NM_001043016; /// NM_001043017; /// NM_001043018; /// NM_001043019; /// NM_001043020; /// NM_001043021; /// NM_001043022; /// NM_001043023; /// NM_001043024; /// NM_001043025; /// NM_001043026; /// NM_001043027; /// NM_001043028; /// NM_001043029; /// NM_001043030; /// NM_001043031; /// NM_001043032; /// NM_001043033; /// NM_001043034; /// NM_001043035; /// NM_001043036; /// NM_001043037; /// NM_001043038; /// NM_001043039; /// NM_001043040; /// NM_001043041; /// NM_001043042; /// NM_001043043; /// NM_001043044; /// NM_001043045; /// NM_001043046; /// NM_001043047; /// NM_001043048; /// NM_001043049; /// NM_001043050; /// NM_001043051; /// NM_001043052; /// NM_001043053; /// NM_001043054; /// NM_001043055; /// NM_001043056; /// NM_001043057; /// NM_001043058; /// NM_001043059; /// NM_001043060; /// NM_001043061; /// NM_001043062; /// NM_001043063; /// NM_001043064; /// NM_001043065; /// NM_078925; /// NM_165513; /// NM_165514; /// NM_206047;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0030424 // axon // inferre
Interpro : 0005515 // protein binding // inferred from direct assay /// 0008046 // axon guidance receptor activity // inferred from
FlyMine data for FBgn0033159.
BDGP gene expression has embryonic in situ data for Dscam: 13 pix of staining in 6 body parts.
Homophila reports that CG17800 is a close match (9e-11) to human gene FGFR1;FLT2;KAL2 (NP_075594), a gene associated with Jackson-Weiss syndrome, 123150 (3);Kallmann syndrome 2, 147950 (3);Pfeiffer syndrome, 101600 (3).
BioGrid reports that CG17800 interacts with CG3727 CG10295 .
TRiP has 2 RNAi stocks for FBgn0033159 available for purchase.
VDRC has 7 RNAi stocks for FBgn0033159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain334 ± 114 of 412.30Up
Head133 ± 64 of 4 4.90Up
Eye98 ± 104 of 4 3.64Up
Thoracicoabdominal ganglion332 ± 114 of 412.30Up
Salivary gland11 ± 40 of 4 0.41Down
Crop96 ± 54 of 4 3.60Up
Midgut55 ± 44 of 4 2.00Up
Tubule51 ± 64 of 4 1.90Up
Hindgut67 ± 34 of 4 2.50Up
Heart59 ± 84 of 4 2.18Up
Fat body15 ± 31 of 4 0.58Down
Ovary1 ± 00 of 4 0.10Down
Testis27 ± 14 of 4 1.00None
Male accessory glands106 ± 14 of 4 3.90Up
Virgin spermatheca20 ± 14 of 4 0.75None
Mated spermatheca30 ± 34 of 4 1.13None
Adult carcass38 ± 34 of 4 1.40Up
Larval CNS437 ± 334 of 416.14Up
Larval Salivary gland18 ± 24 of 4 0.67Down
Larval midgut31 ± 34 of 4 1.16None
Larval tubule37 ± 14 of 4 1.40Up
Larval hindgut240 ± 74 of 4 8.86Up
Larval fat body62 ± 124 of 4 2.30None
Larval trachea598 ± 194 of 422.07Up
Larval carcass161 ± 14 of 4 5.95Up
S2 cells (growing)1151 ± 284 of 442.46Up
Whole fly27 ± 24 of 4


Down syndrome cell adhesion molecule /// ribosomal protein S20 (Dscam /// RpS20):

Annotation Number : CG15693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019936
Gbrowse : chr3R:16647900-16649078 (+) // 100.0 //
Probeset : 1641614_at
Accessions : protein= NP_524421;, nucleotide= NM_079697;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0019936.
BDGP gene expression has embryonic in situ data for RpS20: 4 pix of staining in 1 body parts.
BioGrid reports that CG15693 interacts with CG9793 CG16889 CG17107 CG17230 CG30011 CG30021 CG3003 CG30115 CG4795 CG5576 CG5838 CG6950 CG7928 CG7967 CG8120 CG8198 CG8357 CG8364 .
VDRC has 2 RNAi stocks for FBgn0019936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2592 ± 214 of 4 0.60Down
Head4966 ± 2034 of 4 1.10None
Eye6214 ± 2414 of 4 1.39Up
Thoracicoabdominal ganglion3550 ± 1024 of 4 0.80Down
Salivary gland11524 ± 2644 of 4 2.59Up
Crop6328 ± 3524 of 4 1.40Up
Midgut6102 ± 1664 of 4 1.40Up
Tubule5922 ± 994 of 4 1.30Up
Hindgut4946 ± 1424 of 4 1.10None
Heart7352 ± 5324 of 4 1.65Up
Fat body6245 ± 7634 of 4 1.40Up
Ovary3848 ± 934 of 4 0.90None
Testis1168 ± 104 of 4 0.30Down
Male accessory glands8480 ± 2924 of 4 1.90Up
Virgin spermatheca5104 ± 3204 of 4 1.15None
Mated spermatheca5576 ± 1564 of 4 1.25Up
Adult carcass6171 ± 2914 of 4 1.40Up
Larval CNS3000 ± 1684 of 4 0.67Down
Larval Salivary gland8385 ± 3254 of 4 1.88Up
Larval midgut5460 ± 1574 of 4 1.23Up
Larval tubule4921 ± 1024 of 4 1.10None
Larval hindgut4716 ± 424 of 4 1.06None
Larval fat body8185 ± 8814 of 4 1.80Up
Larval trachea6692 ± 2214 of 4 1.50Up
Larval carcass5357 ± 4664 of 4 1.20None
S2 cells (growing)4681 ± 664 of 4 1.05None
Whole fly4456 ± 2844 of 4


Down syndrome cell adhesion molecule (Dscam):

Annotation Number : HDC04985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033159
Gbrowse : chr2R:3244687-3245791 (-) // 94.37 //
Probeset : 1633601_at
Accessions : protein= NP_001036476; /// NP_001036477; /// NP_001036478; /// NP_001036479; /// NP_001036480; /// NP_001036481; /// NP_001036482; /// NP_001036483; /// NP_001036484; /// NP_001036485; /// NP_001036486; /// NP_001036487; /// NP_001036488; /// NP_001036489; /// NP_001036490; /// NP_001036491; /// NP_001036492; /// NP_001036493; /// NP_001036494; /// NP_001036495; /// NP_001036496; /// NP_001036497; /// NP_001036498; /// NP_001036499; /// NP_001036500; /// NP_001036501; /// NP_001036502; /// NP_001036503; /// NP_001036504; /// NP_001036505; /// NP_001036506; /// NP_001036507; /// NP_001036508; /// NP_001036509; /// NP_001036510; /// NP_001036511; /// NP_001036512; /// NP_001036513; /// NP_001036514; /// NP_001036515; /// NP_001036516; /// NP_001036517; /// NP_001036518; /// NP_001036519; /// NP_001036520; /// NP_001036521; /// NP_001036522; /// NP_001036523; /// NP_001036524; /// NP_001036525; /// NP_001036526; /// NP_001036527; /// NP_001036528; /// NP_001036529; /// NP_001036530; /// NP_523649; /// NP_724542; /// NP_724543; /// NP_995769;, nucleotide= NM_001043011; /// NM_001043012; /// NM_001043013; /// NM_001043014; /// NM_001043015; /// NM_001043016; /// NM_001043017; /// NM_001043018; /// NM_001043019; /// NM_001043020; /// NM_001043021; /// NM_001043022; /// NM_001043023; /// NM_001043024; /// NM_001043025; /// NM_001043026; /// NM_001043027; /// NM_001043028; /// NM_001043029; /// NM_001043030; /// NM_001043031; /// NM_001043032; /// NM_001043033; /// NM_001043034; /// NM_001043035; /// NM_001043036; /// NM_001043037; /// NM_001043038; /// NM_001043039; /// NM_001043040; /// NM_001043041; /// NM_001043042; /// NM_001043043; /// NM_001043044; /// NM_001043045; /// NM_001043046; /// NM_001043047; /// NM_001043048; /// NM_001043049; /// NM_001043050; /// NM_001043051; /// NM_001043052; /// NM_001043053; /// NM_001043054; /// NM_001043055; /// NM_001043056; /// NM_001043057; /// NM_001043058; /// NM_001043059; /// NM_001043060; /// NM_001043061; /// NM_001043062; /// NM_001043063; /// NM_001043064; /// NM_001043065; /// NM_078925; /// NM_165513; /// NM_165514; /// NM_206047;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0030424 // axon // inferre
Interpro : 0005515 // protein binding // inferred from direct assay /// 0008046 // axon guidance receptor activity // inferred from
FlyMine data for FBgn0033159.
BDGP gene expression has embryonic in situ data for Dscam: 13 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0033159 available for purchase.
VDRC has 7 RNAi stocks for FBgn0033159 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head6 ± 00 of 4 1.00None
Eye1 ± 00 of 4 0.19Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.30Down
Salivary gland3 ± 00 of 4 0.56None
Crop6 ± 20 of 4 1.00None
Midgut11 ± 20 of 4 1.70None
Tubule5 ± 00 of 4 0.90None
Hindgut8 ± 20 of 4 1.20None
Heart2 ± 00 of 4 0.44None
Fat body17 ± 30 of 4 2.59Up
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 00 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca5 ± 20 of 4 0.79None
Mated spermatheca10 ± 00 of 4 1.61Up
Adult carcass10 ± 10 of 4 1.50None
Larval CNS1 ± 10 of 4 0.26Down
Larval Salivary gland6 ± 20 of 4 1.03None
Larval midgut11 ± 11 of 4 1.76Up
Larval tubule5 ± 00 of 4 0.80None
Larval hindgut4 ± 00 of 4 0.63None
Larval fat body3 ± 10 of 4 0.50None
Larval trachea2 ± 10 of 4 0.31Down
Larval carcass4 ± 00 of 4 0.74None
S2 cells (growing)4 ± 10 of 4 0.65None
Whole fly6 ± 10 of 4

Looking for FBgn0033159. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime