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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033160 through 18771 annotations produced 1 hits



(CG11107):

Annotation Number : CG11107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033160
Gbrowse : chr2R:3274718-3278529 (+) // 100.0 //
Probeset : 1636354_at
Accessions : protein= NP_610269;, nucleotide= NM_136425;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0033160.
BDGP gene expression has embryonic in situ data for CG11107: 12 pix of staining in 5 body parts.
BioGrid reports that CG11107 interacts with CG30115 .
TRiP has 1 RNAi stocks for FBgn0033160 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 34 of 4 1.00None
Head125 ± 44 of 4 0.70Down
Eye106 ± 44 of 4 0.57Down
Thoracicoabdominal ganglion199 ± 54 of 4 1.10None
Salivary gland132 ± 54 of 4 0.71Down
Crop164 ± 64 of 4 0.90None
Midgut86 ± 114 of 4 0.50Down
Tubule98 ± 64 of 4 0.50Down
Hindgut117 ± 34 of 4 0.60Down
Heart134 ± 64 of 4 0.72Down
Fat body177 ± 104 of 4 0.95None
Ovary254 ± 64 of 4 1.40Up
Testis138 ± 64 of 4 0.70Down
Male accessory glands278 ± 134 of 4 1.50Up
Virgin spermatheca78 ± 24 of 4 0.42Down
Mated spermatheca106 ± 94 of 4 0.57Down
Adult carcass146 ± 54 of 4 0.80Down
Larval CNS395 ± 144 of 4 2.12Up
Larval Salivary gland186 ± 64 of 4 1.00None
Larval midgut72 ± 34 of 4 0.39Down
Larval tubule109 ± 44 of 4 0.60Down
Larval hindgut148 ± 84 of 4 0.80Down
Larval fat body104 ± 184 of 4 0.60Down
Larval trachea244 ± 254 of 4 1.31Up
Larval carcass196 ± 114 of 4 1.05None
S2 cells (growing)250 ± 104 of 4 1.34Up
Whole fly186 ± 104 of 4

Looking for FBgn0033160. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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