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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033169 through 18771 annotations produced 1 hits



/// (CG11123 /// DmirCG11123):

Annotation Number : CG11123
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033169
Gbrowse : chr2R:3328197-3330390 (+) // 100.0 //
Probeset : 1634919_at
Accessions : protein= NP_610276;, nucleotide= NM_136432;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotat
FlyMine data for FBgn0033169.
BDGP gene expression has embryonic in situ data for CG11123: 9 pix of staining in 20 body parts.
TRiP has 1 RNAi stocks for FBgn0033169 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033169 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 14 of 4 0.70Down
Head38 ± 34 of 4 0.60Down
Eye32 ± 14 of 4 0.47Down
Thoracicoabdominal ganglion41 ± 14 of 4 0.60Down
Salivary gland76 ± 94 of 4 1.09None
Crop48 ± 34 of 4 0.70Down
Midgut66 ± 24 of 4 0.90None
Tubule34 ± 43 of 4 0.50Down
Hindgut46 ± 44 of 4 0.70Down
Heart26 ± 14 of 4 0.38Down
Fat body54 ± 64 of 4 0.78Down
Ovary102 ± 54 of 4 1.50Up
Testis25 ± 14 of 4 0.40Down
Male accessory glands96 ± 54 of 4 1.40Up
Virgin spermatheca40 ± 44 of 4 0.58Down
Mated spermatheca50 ± 14 of 4 0.72Down
Adult carcass47 ± 44 of 4 0.70Down
Larval CNS90 ± 24 of 4 1.30Up
Larval Salivary gland89 ± 64 of 4 1.29Up
Larval midgut39 ± 23 of 4 0.56Down
Larval tubule30 ± 24 of 4 0.40Down
Larval hindgut48 ± 34 of 4 0.69Down
Larval fat body37 ± 33 of 4 0.50Down
Larval trachea69 ± 74 of 4 0.99None
Larval carcass51 ± 94 of 4 0.74None
S2 cells (growing)124 ± 24 of 4 1.78Up
Whole fly69 ± 44 of 4

Looking for FBgn0033169. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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