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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033185 through 18771 annotations produced 1 hits



(CG1603):

Annotation Number : CG1603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033185
Gbrowse : chr2R:3401574-3403875 (-) // 100.0 //
Probeset : 1632594_at
Accessions : protein= NP_610290;, nucleotide= NM_136446;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033185.
BDGP gene expression has embryonic in situ data for CG1603: 4 pix of staining in 1 body parts.
Homophila reports that CG1603 is a close match (3e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
TRiP has 1 RNAi stocks for FBgn0033185 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033185 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 24 of 4 1.00None
Head26 ± 24 of 4 0.40Down
Eye26 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion44 ± 64 of 4 0.70None
Salivary gland36 ± 33 of 4 0.61Down
Crop44 ± 24 of 4 0.70Down
Midgut28 ± 14 of 4 0.50Down
Tubule24 ± 34 of 4 0.40Down
Hindgut29 ± 04 of 4 0.50Down
Heart24 ± 04 of 4 0.40Down
Fat body29 ± 44 of 4 0.49Down
Ovary140 ± 74 of 4 2.30Up
Testis88 ± 54 of 4 1.50Up
Male accessory glands72 ± 24 of 4 1.20Up
Virgin spermatheca19 ± 24 of 4 0.33Down
Mated spermatheca24 ± 04 of 4 0.41Down
Adult carcass28 ± 14 of 4 0.50Down
Larval CNS56 ± 24 of 4 0.95None
Larval Salivary gland47 ± 04 of 4 0.79Down
Larval midgut24 ± 14 of 4 0.41Down
Larval tubule34 ± 34 of 4 0.60Down
Larval hindgut31 ± 14 of 4 0.52Down
Larval fat body44 ± 44 of 4 0.70Down
Larval trachea46 ± 34 of 4 0.79Down
Larval carcass29 ± 24 of 4 0.49Down
S2 cells (growing)71 ± 04 of 4 1.19Up
Whole fly59 ± 24 of 4

Looking for FBgn0033185. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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