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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033186 through 18771 annotations produced 1 hits



(CG1602):

Annotation Number : CG1602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033186
Gbrowse : chr2R:3404484-3406416 (-) // 100.0 //
Probeset : 1634277_at
Accessions : protein= NP_608673; /// NP_610291; /// NP_722800;, nucleotide= NM_134829; /// NM_136447; /// NM_164480;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0033186.
Homophila reports that CG1602 is a close match (2e-11) to human gene TNDM1;ZFP57 (NP_001103279), a gene associated with Diabetes mellitus, transient neonatal, 1, 601410 (3).
BioGrid reports that CG1602 interacts with CG8098 .
TRiP has 1 RNAi stocks for FBgn0033186 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 04 of 4 0.90None
Head22 ± 14 of 4 0.50Down
Eye26 ± 24 of 4 0.59Down
Thoracicoabdominal ganglion34 ± 14 of 4 0.80Down
Salivary gland32 ± 24 of 4 0.73Down
Crop32 ± 04 of 4 0.70Down
Midgut21 ± 34 of 4 0.50Down
Tubule14 ± 04 of 4 0.30Down
Hindgut24 ± 14 of 4 0.60Down
Heart11 ± 04 of 4 0.25Down
Fat body19 ± 34 of 4 0.43Down
Ovary85 ± 34 of 4 1.90Up
Testis24 ± 14 of 4 0.60Down
Male accessory glands26 ± 24 of 4 0.60Down
Virgin spermatheca19 ± 14 of 4 0.45Down
Mated spermatheca21 ± 14 of 4 0.48Down
Adult carcass20 ± 13 of 4 0.50Down
Larval CNS61 ± 44 of 4 1.38Up
Larval Salivary gland26 ± 14 of 4 0.61Down
Larval midgut14 ± 13 of 4 0.32Down
Larval tubule25 ± 14 of 4 0.60Down
Larval hindgut24 ± 04 of 4 0.55Down
Larval fat body20 ± 14 of 4 0.50Down
Larval trachea35 ± 34 of 4 0.79Down
Larval carcass27 ± 04 of 4 0.61Down
S2 cells (growing)38 ± 24 of 4 0.86None
Whole fly44 ± 14 of 4

Looking for FBgn0033186. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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