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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033188 through 18771 annotations produced 1 hits



(CG1600):

Annotation Number : CG1600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033188
Gbrowse : chr2R:3413622-3420487 (-) // 100.0 //
Probeset : 1638498_s_at
Accessions : protein= NP_610293; /// NP_724572; /// NP_724573;, nucleotide= NM_136449; /// NM_165538; /// NM_165539;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0033188.
BDGP gene expression has embryonic in situ data for CG1600: 20 pix of staining in 13 body parts.
BioGrid reports that CG1600 interacts with CG8050 CG16747 CG6946 CG8411 .
VDRC has 3 RNAi stocks for FBgn0033188 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1364 154 of 4 3.20Up
Head955 794 of 4 2.30Up
Eye1620 864 of 4 3.85Up
Thoracicoabdominal ganglion1472 394 of 4 3.50Up
Salivary gland5915 1664 of 414.06Up
Crop2884 1214 of 4 6.90Up
Midgut971 924 of 4 2.30Up
Tubule2455 2794 of 4 5.80Up
Hindgut1815 544 of 4 4.30Up
Heart891 274 of 4 2.12Up
Fat body544 1514 of 4 1.30None
Ovary104 84 of 4 0.20Down
Testis68 54 of 4 0.20Down
Male accessory glands278 204 of 4 0.70None
Virgin spermatheca586 534 of 4 1.39None
Mated spermatheca799 1034 of 4 1.90Up
Adult carcass580 364 of 4 1.40Up
Larval CNS1360 964 of 4 3.23Up
Larval Salivary gland211 354 of 4 0.50Down
Larval midgut1225 1774 of 4 2.91Up
Larval tubule3105 524 of 4 7.40Up
Larval hindgut1607 564 of 4 3.82Up
Larval fat body590 464 of 4 1.40Up
Larval trachea1286 2764 of 4 3.06Up
Larval carcass1883 2854 of 4 4.48Up
S2 cells (growing)589 354 of 4 1.40Up
Whole fly420 484 of 4

Looking for FBgn0033188. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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