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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033190 through 18771 annotations produced 1 hits



(CG2137):

Annotation Number : CG2137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033190
Gbrowse : chr2R:3423423-3425802 (+) // 100.0 //
Probeset : 1633992_at
Accessions : protein= NP_610295;, nucleotide= NM_136451;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0009331 // glycerol-3-phosphate dehydrog
Interpro : 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from sequence or structural similarity /// 0004368 //
FlyMine data for FBgn0033190.
Homophila reports that CG2137 is a close match (7e-157) to human gene GPD2 (NP_001076581), a gene associated with {Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 2 RNAi stocks for FBgn0033190 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 14 of 4 0.20Down
Head9 ± 14 of 4 0.10Down
Eye5 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion12 ± 14 of 4 0.20Down
Salivary gland23 ± 91 of 4 0.36Down
Crop12 ± 04 of 4 0.20Down
Midgut15 ± 04 of 4 0.20Down
Tubule11 ± 03 of 4 0.20Down
Hindgut12 ± 14 of 4 0.20Down
Heart8 ± 13 of 4 0.14Down
Fat body12 ± 04 of 4 0.20Down
Ovary7 ± 04 of 4 0.10Down
Testis688 ± 164 of 410.80Up
Male accessory glands13 ± 12 of 4 0.20Down
Virgin spermatheca15 ± 14 of 4 0.25Down
Mated spermatheca15 ± 14 of 4 0.24Down
Adult carcass17 ± 62 of 4 0.30Down
Larval CNS7 ± 14 of 4 0.12Down
Larval Salivary gland11 ± 14 of 4 0.19Down
Larval midgut9 ± 04 of 4 0.14Down
Larval tubule9 ± 03 of 4 0.10Down
Larval hindgut5 ± 12 of 4 0.09Down
Larval fat body47 ± 184 of 4 0.80None
Larval trachea6 ± 23 of 4 0.11Down
Larval carcass13 ± 03 of 4 0.21Down
S2 cells (growing)9 ± 12 of 4 0.15Down
Whole fly63 ± 34 of 4

Looking for FBgn0033190. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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