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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033192 through 18771 annotations produced 1 hits



DCorin (Corin):

Annotation Number : CG2105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033192
Gbrowse : chr2R:3442377-3448759 (+) // 100.0 //
Probeset : 1631123_at
Accessions : protein= NP_995773;, nucleotide= NM_206051;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033192.
Homophila reports that CG2105 is a close match (3e-11) to human gene CHRMQ1;VLDLR (NP_003374), a gene associated with Cerebellar hypoplasia and mental retardation with or without quadrupedal locomotion, 224050 (3).
TRiP has 2 RNAi stocks for FBgn0033192 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033192 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 04 of 4 3.50Up
Head8 ± 32 of 4 1.50None
Eye5 ± 01 of 4 0.96None
Thoracicoabdominal ganglion18 ± 23 of 4 3.00Up
Salivary gland15 ± 30 of 4 2.60None
Crop12 ± 20 of 4 2.00None
Midgut11 ± 12 of 4 2.00Up
Tubule4 ± 00 of 4 0.70Down
Hindgut7 ± 20 of 4 1.20None
Heart6 ± 12 of 4 1.10None
Fat body9 ± 20 of 4 1.66None
Ovary3 ± 10 of 4 0.60None
Testis4 ± 11 of 4 0.80None
Male accessory glands7 ± 20 of 4 1.30None
Virgin spermatheca4 ± 10 of 4 0.76None
Mated spermatheca9 ± 10 of 4 1.54None
Adult carcass9 ± 20 of 4 1.60None
Larval CNS8 ± 23 of 4 1.43None
Larval Salivary gland8 ± 20 of 4 1.50None
Larval midgut14 ± 12 of 4 2.51Up
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut6 ± 10 of 4 1.14None
Larval fat body5 ± 20 of 4 0.90None
Larval trachea8 ± 31 of 4 1.35None
Larval carcass4 ± 10 of 4 0.74None
S2 cells (growing)12 ± 03 of 4 2.03Up
Whole fly6 ± 00 of 4

Looking for FBgn0033192. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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