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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033205 through 18771 annotations produced 1 hits


Annotation Number : CG2064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033205
Gbrowse : chr2R:3553336-3554852 (+) // 100.0 //
Probeset : 1634019_at
Accessions : protein= NP_610310;, nucleotide= NM_136466;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0033205.
Homophila reports that CG2064 is a close match (1e-50) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
TRiP has 1 RNAi stocks for FBgn0033205 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033205 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 34 of 4 0.60None
Head65 44 of 4 0.80None
Eye32 34 of 4 0.39Down
Thoracicoabdominal ganglion75 44 of 4 0.90None
Salivary gland320 264 of 4 3.83Up
Crop131 64 of 4 1.60Up
Midgut398 364 of 4 4.80Up
Tubule102 174 of 4 1.20None
Hindgut98 64 of 4 1.20None
Heart62 44 of 4 0.75None
Fat body71 14 of 4 0.85None
Ovary8 02 of 4 0.10Down
Testis41 44 of 4 0.50None
Male accessory glands24 32 of 4 0.30Down
Virgin spermatheca144 224 of 4 1.73None
Mated spermatheca113 94 of 4 1.35None
Adult carcass124 54 of 4 1.50None
Larval CNS34 54 of 4 0.41Down
Larval Salivary gland161 104 of 4 1.94Up
Larval midgut113 84 of 4 1.36None
Larval tubule90 24 of 4 1.10None
Larval hindgut46 34 of 4 0.56None
Larval fat body173 204 of 4 2.10Up
Larval trachea43 54 of 4 0.52None
Larval carcass44 34 of 4 0.53None
S2 cells (growing)619 134 of 4 7.42Up
Whole fly83 154 of 4

Looking for FBgn0033205. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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