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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033206 through 18771 annotations produced 1 hits

P62 DYNACTIN (CG12042):

Annotation Number : CG12042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033206
Gbrowse : chr2R:3554745-3556534 (-) // 100.0 //
Probeset : 1639586_at
Accessions : protein= NP_610311;, nucleotide= NM_136467;
Pathway : 0005869 // dynactin complex // inferred from sequence or structural similarity
FlyMine data for FBgn0033206.
BDGP gene expression has embryonic in situ data for CG12042: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033206 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 34 of 4 1.40Up
Head81 34 of 4 0.80Down
Eye119 24 of 4 1.19Up
Thoracicoabdominal ganglion153 34 of 4 1.50Up
Salivary gland142 104 of 4 1.42Up
Crop150 34 of 4 1.50Up
Midgut106 64 of 4 1.10None
Tubule103 14 of 4 1.00None
Hindgut124 44 of 4 1.20Up
Heart96 34 of 4 0.96None
Fat body55 04 of 4 0.55Down
Ovary204 34 of 4 2.00Up
Testis25 14 of 4 0.30Down
Male accessory glands102 54 of 4 1.00None
Virgin spermatheca76 54 of 4 0.77Down
Mated spermatheca99 74 of 4 1.00None
Adult carcass75 24 of 4 0.80Down
Larval CNS137 64 of 4 1.37Up
Larval Salivary gland158 24 of 4 1.58Up
Larval midgut91 24 of 4 0.91Down
Larval tubule121 24 of 4 1.20Up
Larval hindgut154 24 of 4 1.54Up
Larval fat body57 34 of 4 0.60Down
Larval trachea128 144 of 4 1.28Up
Larval carcass123 64 of 4 1.23Up
S2 cells (growing)144 14 of 4 1.44Up
Whole fly100 24 of 4

Looking for FBgn0033206. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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