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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033208 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L52 (mRpL52):

Annotation Number : CG1577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033208
Gbrowse : chr2R:3561219-3561908 (-) // 100.0 //
Probeset : 1624044_at
Accessions : protein= NP_610313;, nucleotide= NM_136469;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0033208.
BDGP gene expression has embryonic in situ data for mRpL52: 11 pix of staining in 5 body parts.
BioGrid reports that CG1577 interacts with CG5053 .
VDRC has 3 RNAi stocks for FBgn0033208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 124 of 4 1.10None
Head110 ± 74 of 4 0.80None
Eye184 ± 174 of 4 1.32None
Thoracicoabdominal ganglion241 ± 134 of 4 1.70Up
Salivary gland147 ± 144 of 4 1.05None
Crop171 ± 84 of 4 1.20None
Midgut124 ± 64 of 4 0.90None
Tubule46 ± 14 of 4 0.30Down
Hindgut90 ± 84 of 4 0.60Down
Heart170 ± 114 of 4 1.22None
Fat body127 ± 194 of 4 0.91None
Ovary280 ± 34 of 4 2.00Up
Testis87 ± 54 of 4 0.60Down
Male accessory glands100 ± 74 of 4 0.70None
Virgin spermatheca67 ± 73 of 4 0.48Down
Mated spermatheca93 ± 44 of 4 0.67None
Adult carcass120 ± 64 of 4 0.90None
Larval CNS212 ± 284 of 4 1.52Up
Larval Salivary gland194 ± 44 of 4 1.39Up
Larval midgut79 ± 31 of 4 0.57Down
Larval tubule123 ± 44 of 4 0.90None
Larval hindgut216 ± 214 of 4 1.55Up
Larval fat body105 ± 54 of 4 0.80None
Larval trachea186 ± 254 of 4 1.33None
Larval carcass111 ± 34 of 4 0.80None
S2 cells (growing)149 ± 134 of 4 1.07None
Whole fly139 ± 154 of 4

Looking for FBgn0033208. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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