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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033210 through 18771 annotations produced 1 hits



lethal(2)43Ee (U2A):

Annotation Number : CG1406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033210
Gbrowse : chr2R:3562865-3563857 (-) // 100.0 //
Probeset : 1631575_at
Accessions : protein= NP_610315;, nucleotide= NM_136471;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // infer
FlyMine data for FBgn0033210.
BDGP gene expression has embryonic in situ data for U2A: 4 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0033210 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033210 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 0.40Down
Head28 34 of 4 0.30Down
Eye25 24 of 4 0.27Down
Thoracicoabdominal ganglion23 14 of 4 0.20Down
Salivary gland31 11 of 4 0.33Down
Crop28 44 of 4 0.30Down
Midgut32 21 of 4 0.30Down
Tubule18 11 of 4 0.20Down
Hindgut26 13 of 4 0.30Down
Heart30 44 of 4 0.32Down
Fat body26 30 of 4 0.27Down
Ovary187 34 of 4 2.00Up
Testis27 14 of 4 0.30Down
Male accessory glands48 04 of 4 0.50Down
Virgin spermatheca14 10 of 4 0.15Down
Mated spermatheca13 20 of 4 0.14Down
Adult carcass22 31 of 4 0.20Down
Larval CNS149 114 of 4 1.57Up
Larval Salivary gland71 24 of 4 0.75Down
Larval midgut12 20 of 4 0.13Down
Larval tubule32 14 of 4 0.30Down
Larval hindgut31 14 of 4 0.33Down
Larval fat body29 34 of 4 0.30Down
Larval trachea85 194 of 4 0.89None
Larval carcass31 14 of 4 0.33Down
S2 cells (growing)120 24 of 4 1.26Up
Whole fly95 74 of 4

Looking for FBgn0033210. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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