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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033212 through 18771 annotations produced 3 hits



Dcarmil (CG1399):

Annotation Number : S.C2R000284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033212
Gbrowse : chr2R:3584561-3585651 (-) // 100.0 //
Probeset : 1635554_at
Accessions : protein= NP_001163075; /// NP_001163076; /// NP_001163077; /// NP_610316; /// NP_724593;, nucleotide= NM_001169604; /// NM_001169605; /// NM_001169606; /// NM_136472; /// NM_165549;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0017024 // myosin I binding // inferred from seque
FlyMine data for FBgn0033212.
TRiP has 1 RNAi stocks for FBgn0033212 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.90None
Head0 00 of 4 0.40None
Eye1 00 of 4 0.83None
Thoracicoabdominal ganglion3 10 of 4 1.50None
Salivary gland10 30 of 4 4.56None
Crop5 10 of 4 2.30None
Midgut2 10 of 4 1.10None
Tubule3 00 of 4 1.50None
Hindgut2 10 of 4 1.00None
Heart2 10 of 4 1.16None
Fat body3 30 of 4 1.62None
Ovary3 10 of 4 1.40None
Testis3 10 of 4 1.50None
Male accessory glands7 30 of 4 3.10None
Virgin spermatheca4 10 of 4 1.91None
Mated spermatheca5 10 of 4 2.53None
Adult carcass7 20 of 4 3.10None
Larval CNS1 10 of 4 0.78None
Larval Salivary gland3 10 of 4 1.32None
Larval midgut2 00 of 4 1.01None
Larval tubule3 10 of 4 1.40None
Larval hindgut3 10 of 4 1.43None
Larval fat body3 10 of 4 1.30None
Larval trachea3 30 of 4 1.41None
Larval carcass5 10 of 4 2.31None
S2 cells (growing)8 10 of 4 3.86Up
Whole fly2 10 of 4



Dcarmil (CG1399):

Annotation Number : S.C2R000283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033212
Gbrowse : chr2R:3575700-3582699 (-) // 98.55 //
Probeset : 1626672_at
Accessions : protein= NP_001163075; /// NP_001163076; /// NP_001163077; /// NP_610316; /// NP_724593;, nucleotide= NM_001169604; /// NM_001169605; /// NM_001169606; /// NM_136472; /// NM_165549;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0017024 // myosin I binding // inferred from seque
FlyMine data for FBgn0033212.
TRiP has 1 RNAi stocks for FBgn0033212 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 1.00None
Head4 02 of 4 0.60Down
Eye1 00 of 4 0.23Down
Thoracicoabdominal ganglion5 11 of 4 0.70None
Salivary gland4 10 of 4 0.56None
Crop3 10 of 4 0.40Down
Midgut11 21 of 4 1.40None
Tubule4 00 of 4 0.60Down
Hindgut4 02 of 4 0.60Down
Heart3 10 of 4 0.50Down
Fat body5 13 of 4 0.64None
Ovary6 00 of 4 0.90None
Testis5 00 of 4 0.70None
Male accessory glands10 12 of 4 1.40None
Virgin spermatheca3 10 of 4 0.47Down
Mated spermatheca3 10 of 4 0.49Down
Adult carcass11 11 of 4 1.50None
Larval CNS2 00 of 4 0.28Down
Larval Salivary gland17 44 of 4 2.17None
Larval midgut7 20 of 4 0.99None
Larval tubule11 11 of 4 1.50None
Larval hindgut5 12 of 4 0.63None
Larval fat body12 01 of 4 1.60Up
Larval trachea0 00 of 4 0.06Down
Larval carcass2 00 of 4 0.30Down
S2 cells (growing)23 23 of 4 3.06Up
Whole fly7 01 of 4



Dcarmil (CG1399):

Annotation Number : CG1399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033212
Gbrowse : chr2R:3565496-3574589 (-) // 100.0 //
Probeset : 1636989_a_at
Accessions : protein= NP_001163075; /// NP_001163076; /// NP_001163077; /// NP_610316; /// NP_724593;, nucleotide= NM_001169604; /// NM_001169605; /// NM_001169606; /// NM_136472; /// NM_165549;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0017024 // myosin I binding // inferred from seque
FlyMine data for FBgn0033212.
TRiP has 1 RNAi stocks for FBgn0033212 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 14 of 4 0.80None
Head19 14 of 4 0.60Down
Eye17 24 of 4 0.52Down
Thoracicoabdominal ganglion28 24 of 4 0.80None
Salivary gland57 14 of 4 1.74Up
Crop22 04 of 4 0.70Down
Midgut105 54 of 4 3.20Up
Tubule115 44 of 4 3.50Up
Hindgut77 34 of 4 2.30Up
Heart31 54 of 4 0.93None
Fat body14 24 of 4 0.44Down
Ovary22 14 of 4 0.70Down
Testis37 54 of 4 1.10None
Male accessory glands77 44 of 4 2.30Up
Virgin spermatheca10 04 of 4 0.30Down
Mated spermatheca7 13 of 4 0.23Down
Adult carcass21 44 of 4 0.70None
Larval CNS23 34 of 4 0.71Down
Larval Salivary gland39 24 of 4 1.17None
Larval midgut150 94 of 4 4.53Up
Larval tubule172 74 of 4 5.20Up
Larval hindgut110 54 of 4 3.32Up
Larval fat body53 04 of 4 1.60Up
Larval trachea57 34 of 4 1.72Up
Larval carcass25 24 of 4 0.76None
S2 cells (growing)311 144 of 4 9.36Up
Whole fly33 24 of 4

Looking for FBgn0033212. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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