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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033214 through 18771 annotations produced 1 hits


Annotation Number : CG1941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033214
Gbrowse : chr2R:3597378-3599490 (+) // 99.68 //
Probeset : 1626094_at
Accessions : protein= NP_610317;, nucleotide= NM_136473;
Interpro : "0016747 // transferase activity
FlyMine data for FBgn0033214.
BDGP gene expression has embryonic in situ data for CG1941: 11 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0033214 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 12 of 4 0.20Down
Head43 44 of 4 0.70Down
Eye14 14 of 4 0.22Down
Thoracicoabdominal ganglion17 24 of 4 0.30Down
Salivary gland15 50 of 4 0.23Down
Crop4 20 of 4 0.10Down
Midgut466 154 of 4 7.10Up
Tubule21 73 of 4 0.30Down
Hindgut193 134 of 4 3.00Up
Heart8 12 of 4 0.13Down
Fat body17 60 of 4 0.26Down
Ovary15 04 of 4 0.20Down
Testis25 44 of 4 0.40Down
Male accessory glands103 174 of 4 1.60None
Virgin spermatheca10 10 of 4 0.16Down
Mated spermatheca17 30 of 4 0.26Down
Adult carcass88 64 of 4 1.40Up
Larval CNS5 01 of 4 0.09Down
Larval Salivary gland8 11 of 4 0.13Down
Larval midgut462 214 of 4 7.09Up
Larval tubule18 24 of 4 0.30Down
Larval hindgut112 84 of 4 1.72Up
Larval fat body18 21 of 4 0.30Down
Larval trachea3 00 of 4 0.06Down
Larval carcass29 44 of 4 0.46Down
S2 cells (growing)5 00 of 4 0.08Down
Whole fly65 64 of 4

Looking for FBgn0033214. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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