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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033215 through 18771 annotations produced 1 hits



(CG1942):

Annotation Number : CG1942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033215
Gbrowse : chr2R:3600127-3601695 (+) // 100.0 //
Probeset : 1641125_at
Accessions : protein= NP_610318;, nucleotide= NM_136474;
Interpro : "0016747 // transferase activity
FlyMine data for FBgn0033215.
BDGP gene expression has embryonic in situ data for CG1942: 39 pix of staining in 6 body parts.
VDRC has 5 RNAi stocks for FBgn0033215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head51 143 of 4 2.80None
Eye16 31 of 4 0.90None
Thoracicoabdominal ganglion5 10 of 4 0.30Down
Salivary gland17 40 of 4 0.91None
Crop9 20 of 4 0.50None
Midgut165 154 of 4 8.90Up
Tubule8 10 of 4 0.50Down
Hindgut12 10 of 4 0.70None
Heart73 164 of 4 3.92Up
Fat body237 1214 of 412.72Up
Ovary3 00 of 4 0.20Down
Testis3 10 of 4 0.20Down
Male accessory glands8 40 of 4 0.40None
Virgin spermatheca35 34 of 4 1.89Up
Mated spermatheca120 244 of 4 6.49Up
Adult carcass128 254 of 4 6.90Up
Larval CNS1 00 of 4 0.05Down
Larval Salivary gland1 00 of 4 0.09Down
Larval midgut251 274 of 413.50Up
Larval tubule8 10 of 4 0.40None
Larval hindgut3 10 of 4 0.16Down
Larval fat body8 30 of 4 0.50None
Larval trachea4 20 of 4 0.25Down
Larval carcass4 20 of 4 0.24Down
S2 cells (growing)1 00 of 4 0.07Down
Whole fly18 42 of 4

Looking for FBgn0033215. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime