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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033222 through 18771 annotations produced 1 hits



(CG12824):

Annotation Number : CG12824
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033222
Gbrowse : chr2R:3677906-3678502 (+) // 100.0 //
Probeset : 1633707_at
Accessions : protein= NP_001097214; /// NP_610323;, nucleotide= NM_001103744; /// NM_136479;
Interpro : 0031177 // phosphopantetheine binding // inferred from electronic annotation
FlyMine data for FBgn0033222.
BioGrid reports that CG12824 interacts with CG17610 .
VDRC has 1 RNAi stocks for FBgn0033222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head6 ± 21 of 4 0.10Down
Eye5 ± 11 of 4 0.06Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.10Down
Salivary gland15 ± 60 of 4 0.16Down
Crop3 ± 00 of 4 0.00Down
Midgut926 ± 184 of 410.00Up
Tubule1811 ± 1424 of 419.60Up
Hindgut372 ± 74 of 4 4.00Up
Heart157 ± 134 of 4 1.70Up
Fat body25 ± 103 of 4 0.28Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands12 ± 31 of 4 0.10Down
Virgin spermatheca11 ± 11 of 4 0.12Down
Mated spermatheca9 ± 03 of 4 0.11Down
Adult carcass9 ± 11 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland11 ± 22 of 4 0.12Down
Larval midgut2426 ± 914 of 426.30Up
Larval tubule3123 ± 154 of 433.90Up
Larval hindgut808 ± 744 of 4 8.76Up
Larval fat body78 ± 204 of 4 0.80None
Larval trachea6 ± 31 of 4 0.07Down
Larval carcass10 ± 33 of 4 0.11Down
S2 cells (growing)6 ± 01 of 4 0.07Down
Whole fly92 ± 94 of 4

Looking for FBgn0033222. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime