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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033224 through 18771 annotations produced 1 hits



(CG1553):

Annotation Number : CG1553
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033224
Gbrowse : chr2R:3688285-3693904 (-) // 100.0 //
Probeset : 1626769_s_at
Accessions : protein= NP_610324; /// NP_724604; /// NP_724605;, nucleotide= NM_136480; /// NM_165557; /// NM_165558;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0033224.
BioGrid reports that CG1553 interacts with CG5650 CG6593 CG5303 .
VDRC has 2 RNAi stocks for FBgn0033224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain368 ± 314 of 4 1.40Up
Head238 ± 274 of 4 0.90None
Eye131 ± 84 of 4 0.50Down
Thoracicoabdominal ganglion356 ± 174 of 4 1.40Up
Salivary gland193 ± 44 of 4 0.74Down
Crop225 ± 204 of 4 0.90None
Midgut257 ± 54 of 4 1.00None
Tubule471 ± 944 of 4 1.80Up
Hindgut1498 ± 194 of 4 5.70Up
Heart131 ± 74 of 4 0.50Down
Fat body237 ± 444 of 4 0.91None
Ovary468 ± 64 of 4 1.80Up
Testis73 ± 24 of 4 0.30Down
Male accessory glands584 ± 294 of 4 2.20Up
Virgin spermatheca422 ± 504 of 4 1.62Up
Mated spermatheca258 ± 184 of 4 0.99None
Adult carcass105 ± 34 of 4 0.40Down
Larval CNS449 ± 404 of 4 1.72Up
Larval Salivary gland195 ± 144 of 4 0.75Down
Larval midgut92 ± 74 of 4 0.35Down
Larval tubule149 ± 54 of 4 0.60Down
Larval hindgut924 ± 844 of 4 3.54Up
Larval fat body97 ± 54 of 4 0.40Down
Larval trachea141 ± 84 of 4 0.54Down
Larval carcass134 ± 64 of 4 0.51Down
S2 cells (growing)128 ± 24 of 4 0.49Down
Whole fly261 ± 204 of 4

Looking for FBgn0033224. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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