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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033226 through 18771 annotations produced 1 hits



(CG1882):

Annotation Number : CG1882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033226
Gbrowse : chr2R:3700010-3702250 (+) // 100.0 //
Probeset : 1638693_s_at
Accessions : protein= NP_610326; /// NP_724609; /// NP_724610; /// NP_724611;, nucleotide= NM_136482; /// NM_165560; /// NM_165561; /// NM_165562;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0033226.
BDGP gene expression has embryonic in situ data for CG1882: 12 pix of staining in 11 body parts.
Homophila reports that CG1882 is a close match (3e-79) to human gene ABHD5;CGI58;IECN2;NCIE2 (NP_057090), a gene associated with Chanarin-Dorfman syndrome, 275630 (3).
VDRC has 2 RNAi stocks for FBgn0033226 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain258 ± 54 of 4 0.80Down
Head354 ± 94 of 4 1.10None
Eye313 ± 94 of 4 0.99None
Thoracicoabdominal ganglion303 ± 64 of 4 1.00None
Salivary gland285 ± 104 of 4 0.90None
Crop478 ± 64 of 4 1.50Up
Midgut765 ± 394 of 4 2.40Up
Tubule1527 ± 234 of 4 4.80Up
Hindgut536 ± 94 of 4 1.70Up
Heart683 ± 54 of 4 2.16Up
Fat body609 ± 394 of 4 1.92Up
Ovary199 ± 34 of 4 0.60Down
Testis583 ± 74 of 4 1.80Up
Male accessory glands126 ± 84 of 4 0.40Down
Virgin spermatheca325 ± 34 of 4 1.03None
Mated spermatheca538 ± 444 of 4 1.70Up
Adult carcass583 ± 274 of 4 1.80Up
Larval CNS128 ± 74 of 4 0.40Down
Larval Salivary gland158 ± 64 of 4 0.50Down
Larval midgut460 ± 304 of 4 1.45Up
Larval tubule590 ± 84 of 4 1.90Up
Larval hindgut296 ± 264 of 4 0.94None
Larval fat body249 ± 254 of 4 0.80None
Larval trachea206 ± 394 of 4 0.65Down
Larval carcass238 ± 164 of 4 0.75Down
S2 cells (growing)464 ± 94 of 4 1.46Up
Whole fly317 ± 154 of 4

Looking for FBgn0033226. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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