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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033235 through 18771 annotations produced 1 hits



(CG8728):

Annotation Number : CG8728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033235
Gbrowse : chr2R:3824361-3826674 (-) // 100.0 //
Probeset : 1628751_at
Accessions : protein= NP_610333;, nucleotide= NM_136489;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inf
FlyMine data for FBgn0033235.
BDGP gene expression has embryonic in situ data for CG8728: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0033235 available for purchase.
VDRC has 4 RNAi stocks for FBgn0033235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain257 34 of 4 0.80Down
Head201 64 of 4 0.70Down
Eye163 44 of 4 0.53Down
Thoracicoabdominal ganglion282 34 of 4 0.90Down
Salivary gland197 84 of 4 0.64Down
Crop244 64 of 4 0.80Down
Midgut204 44 of 4 0.70Down
Tubule328 354 of 4 1.10None
Hindgut207 124 of 4 0.70Down
Heart210 34 of 4 0.68Down
Fat body251 164 of 4 0.82Down
Ovary406 84 of 4 1.30Up
Testis1107 374 of 4 3.60Up
Male accessory glands210 94 of 4 0.70Down
Virgin spermatheca249 74 of 4 0.81Down
Mated spermatheca253 164 of 4 0.82Down
Adult carcass225 104 of 4 0.70Down
Larval CNS291 294 of 4 0.95None
Larval Salivary gland314 134 of 4 1.02None
Larval midgut207 164 of 4 0.68Down
Larval tubule203 144 of 4 0.70Down
Larval hindgut297 104 of 4 0.97None
Larval fat body255 224 of 4 0.80None
Larval trachea191 234 of 4 0.62Down
Larval carcass262 244 of 4 0.85None
S2 cells (growing)379 124 of 4 1.23Up
Whole fly307 34 of 4

Looking for FBgn0033235. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime