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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033236 through 18771 annotations produced 1 hits


Annotation Number : CG14764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033236
Gbrowse : chr2R:3829544-3843377 (-) // 100.0 //
Probeset : 1625332_at
Accessions : protein= NP_788283;, nucleotide= NM_176103;
FlyMine data for FBgn0033236.
BDGP gene expression has embryonic in situ data for CG14764: 4 pix of staining in 1 body parts.
BioGrid reports that CG14764 interacts with CG1759 .
VDRC has 1 RNAi stocks for FBgn0033236 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain352 64 of 4 1.30Up
Head207 54 of 4 0.70Down
Eye229 64 of 4 0.83Down
Thoracicoabdominal ganglion368 34 of 4 1.30Up
Salivary gland231 54 of 4 0.84Down
Crop147 54 of 4 0.50Down
Midgut176 74 of 4 0.60Down
Tubule379 144 of 4 1.40Up
Hindgut160 54 of 4 0.60Down
Heart123 04 of 4 0.45Down
Fat body144 94 of 4 0.52Down
Ovary649 74 of 4 2.30Up
Testis37 24 of 4 0.10Down
Male accessory glands255 114 of 4 0.90None
Virgin spermatheca175 254 of 4 0.64Down
Mated spermatheca203 44 of 4 0.74Down
Adult carcass149 44 of 4 0.50Down
Larval CNS289 274 of 4 1.05None
Larval Salivary gland169 44 of 4 0.61Down
Larval midgut211 54 of 4 0.77Down
Larval tubule395 94 of 4 1.40Up
Larval hindgut288 94 of 4 1.04None
Larval fat body138 84 of 4 0.50Down
Larval trachea91 54 of 4 0.33Down
Larval carcass96 24 of 4 0.35Down
S2 cells (growing)262 14 of 4 0.95None
Whole fly276 64 of 4

Looking for FBgn0033236. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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