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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033240 through 18771 annotations produced 1 hits



(CG2906):

Annotation Number : CG2906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033240
Gbrowse : chr2R:3843166-3845571 (+) // 100.0 //
Probeset : 1632877_a_at
Accessions : protein= NP_001097225;, nucleotide= NM_001103755;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0033240.
VDRC has 1 RNAi stocks for FBgn0033240 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 ± 14 of 4 2.40Up
Head28 ± 24 of 4 1.00None
Eye34 ± 34 of 4 1.26None
Thoracicoabdominal ganglion48 ± 34 of 4 1.80Up
Salivary gland42 ± 54 of 4 1.53None
Crop24 ± 24 of 4 0.90None
Midgut30 ± 14 of 4 1.10None
Tubule14 ± 12 of 4 0.50Down
Hindgut20 ± 14 of 4 0.70Down
Heart28 ± 14 of 4 1.05None
Fat body29 ± 24 of 4 1.07None
Ovary41 ± 24 of 4 1.50Up
Testis14 ± 14 of 4 0.50Down
Male accessory glands30 ± 24 of 4 1.10None
Virgin spermatheca20 ± 14 of 4 0.75Down
Mated spermatheca21 ± 13 of 4 0.79None
Adult carcass29 ± 34 of 4 1.10None
Larval CNS55 ± 54 of 4 2.03Up
Larval Salivary gland31 ± 34 of 4 1.13None
Larval midgut50 ± 64 of 4 1.82Up
Larval tubule52 ± 34 of 4 1.90Up
Larval hindgut37 ± 14 of 4 1.38Up
Larval fat body70 ± 44 of 4 2.60Up
Larval trachea56 ± 64 of 4 2.05Up
Larval carcass29 ± 44 of 4 1.08None
S2 cells (growing)45 ± 34 of 4 1.66Up
Whole fly27 ± 24 of 4

Looking for FBgn0033240. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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