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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033250 through 18771 annotations produced 1 hits



gp150-like (CG14762):

Annotation Number : CG14762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033250
Gbrowse : chr2R:3896615-3901259 (-) // 100.0 //
Probeset : 1632809_at
Accessions : protein= NP_610346;, nucleotide= NM_136502;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0033250.
BDGP gene expression has embryonic in situ data for CG14762: 11 pix of staining in 6 body parts.
Homophila reports that CG14762 is a close match (3e-11) to human gene EPT;ETL1;LGI1 (NP_005088), a gene associated with Epilepsy, partial, with auditory features, 600512 (3);Glioblastoma, somatic, 137800 (3).
TRiP has 1 RNAi stocks for FBgn0033250 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033250 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1609 ± 404 of 4 9.70Up
Head793 ± 294 of 4 4.80Up
Eye352 ± 234 of 4 2.11Up
Thoracicoabdominal ganglion1362 ± 84 of 4 8.20Up
Salivary gland6 ± 30 of 4 0.04Down
Crop9 ± 22 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule11 ± 21 of 4 0.10Down
Hindgut26 ± 14 of 4 0.20Down
Heart259 ± 144 of 4 1.55Up
Fat body803 ± 914 of 4 4.82Up
Ovary1 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands6 ± 11 of 4 0.00Down
Virgin spermatheca1184 ± 604 of 4 7.11Up
Mated spermatheca1028 ± 944 of 4 6.17Up
Adult carcass448 ± 314 of 4 2.70Up
Larval CNS614 ± 314 of 4 3.69Up
Larval Salivary gland4 ± 10 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body15 ± 32 of 4 0.10Down
Larval trachea7 ± 61 of 4 0.04Down
Larval carcass13 ± 21 of 4 0.08Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly166 ± 134 of 4

Looking for FBgn0033250. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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