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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033258 through 18771 annotations produced 1 hits



(CG8712):

Annotation Number : CG8712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033258
Gbrowse : chr2R:3984441-3985959 (-) // 100.0 //
Probeset : 1640084_a_at
Accessions : protein= NP_610350; /// NP_724644;, nucleotide= NM_136506; /// NM_165587;
FlyMine data for FBgn0033258.
BDGP gene expression has embryonic in situ data for CG8712: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 24 of 4 0.30Down
Head19 24 of 4 0.20Down
Eye19 34 of 4 0.15Down
Thoracicoabdominal ganglion30 34 of 4 0.20Down
Salivary gland3 10 of 4 0.02Down
Crop11 13 of 4 0.10Down
Midgut9 10 of 4 0.10Down
Tubule14 03 of 4 0.10Down
Hindgut12 14 of 4 0.10Down
Heart16 34 of 4 0.13Down
Fat body16 22 of 4 0.13Down
Ovary128 64 of 4 1.00None
Testis710 84 of 4 5.50Up
Male accessory glands44 24 of 4 0.30Down
Virgin spermatheca11 02 of 4 0.09Down
Mated spermatheca12 03 of 4 0.09Down
Adult carcass15 24 of 4 0.10Down
Larval CNS70 104 of 4 0.54Down
Larval Salivary gland7 20 of 4 0.06Down
Larval midgut13 01 of 4 0.10Down
Larval tubule20 04 of 4 0.20Down
Larval hindgut16 24 of 4 0.12Down
Larval fat body96 464 of 4 0.70None
Larval trachea30 24 of 4 0.23Down
Larval carcass13 10 of 4 0.10Down
S2 cells (growing)22 14 of 4 0.17Down
Whole fly130 94 of 4

Looking for FBgn0033258. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime