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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033259 through 18771 annotations produced 1 hits



(CG11210):

Annotation Number : CG11210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033259
Gbrowse : chr2R:3986189-3989409 (+) // 100.0 //
Probeset : 1635538_at
Accessions : protein= NP_610351;, nucleotide= NM_136507;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0033259.
BDGP gene expression has embryonic in situ data for CG11210: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 ± 34 of 4 1.30Up
Head151 ± 114 of 4 1.30Up
Eye185 ± 144 of 4 1.62Up
Thoracicoabdominal ganglion118 ± 124 of 4 1.00None
Salivary gland200 ± 144 of 4 1.75Up
Crop166 ± 74 of 4 1.40Up
Midgut195 ± 94 of 4 1.70Up
Tubule343 ± 214 of 4 3.00Up
Hindgut194 ± 84 of 4 1.70Up
Heart113 ± 44 of 4 0.99None
Fat body129 ± 204 of 4 1.13None
Ovary195 ± 64 of 4 1.70Up
Testis52 ± 24 of 4 0.50Down
Male accessory glands110 ± 54 of 4 1.00None
Virgin spermatheca77 ± 14 of 4 0.67Down
Mated spermatheca66 ± 54 of 4 0.58Down
Adult carcass126 ± 94 of 4 1.10None
Larval CNS81 ± 24 of 4 0.71Down
Larval Salivary gland253 ± 324 of 4 2.21Up
Larval midgut315 ± 94 of 4 2.75Up
Larval tubule526 ± 114 of 4 4.60Up
Larval hindgut193 ± 04 of 4 1.69Up
Larval fat body130 ± 84 of 4 1.10None
Larval trachea152 ± 134 of 4 1.32Up
Larval carcass144 ± 204 of 4 1.26None
S2 cells (growing)304 ± 124 of 4 2.66Up
Whole fly114 ± 54 of 4

Looking for FBgn0033259. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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