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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033261 through 18771 annotations produced 1 hits



(CG18316):

Annotation Number : CG18316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033261
Gbrowse : chr2R:3993930-3994878 (+) // 100.0 //
Probeset : 1627116_at
Accessions : protein= NP_610353;, nucleotide= NM_136509;
FlyMine data for FBgn0033261.
BDGP gene expression has embryonic in situ data for CG18316: 16 pix of staining in 3 body parts.
BioGrid reports that CG18316 interacts with CG2046 CG7352 CG7524 .
VDRC has 2 RNAi stocks for FBgn0033261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 ± 44 of 4 0.70Down
Head107 ± 64 of 4 0.80None
Eye142 ± 74 of 4 1.10None
Thoracicoabdominal ganglion84 ± 84 of 4 0.70Down
Salivary gland62 ± 54 of 4 0.48Down
Crop100 ± 44 of 4 0.80None
Midgut91 ± 24 of 4 0.70Down
Tubule95 ± 34 of 4 0.70Down
Hindgut75 ± 34 of 4 0.60Down
Heart111 ± 54 of 4 0.86None
Fat body97 ± 54 of 4 0.75None
Ovary247 ± 74 of 4 1.90Up
Testis50 ± 34 of 4 0.40Down
Male accessory glands141 ± 84 of 4 1.10None
Virgin spermatheca170 ± 144 of 4 1.31None
Mated spermatheca187 ± 44 of 4 1.45Up
Adult carcass73 ± 34 of 4 0.60Down
Larval CNS360 ± 404 of 4 2.78Up
Larval Salivary gland238 ± 184 of 4 1.83Up
Larval midgut152 ± 114 of 4 1.18None
Larval tubule206 ± 94 of 4 1.60Up
Larval hindgut210 ± 94 of 4 1.62Up
Larval fat body221 ± 234 of 4 1.70Up
Larval trachea336 ± 504 of 4 2.59Up
Larval carcass146 ± 84 of 4 1.13None
S2 cells (growing)211 ± 24 of 4 1.63Up
Whole fly129 ± 104 of 4

Looking for FBgn0033261. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime