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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033266 through 18771 annotations produced 1 hits

Suppressor of Cytokine Signaling at 44E (Socs44A):

Annotation Number : CG2160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033266
Gbrowse : chr2R:4015135-4016981 (+) // 100.0 //
Probeset : 1633403_at
Accessions : protein= NP_523659;, nucleotide= NM_078935;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0033266.
BDGP gene expression has embryonic in situ data for Socs44A: 6 pix of staining in 1 body parts.
BioGrid reports that CG2160 interacts with CG9291 .
VDRC has 3 RNAi stocks for FBgn0033266 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 84 of 4 1.80Up
Head133 34 of 4 1.00None
Eye108 64 of 4 0.84None
Thoracicoabdominal ganglion234 74 of 4 1.80Up
Salivary gland107 64 of 4 0.83None
Crop133 34 of 4 1.00None
Midgut241 54 of 4 1.90Up
Tubule129 34 of 4 1.00None
Hindgut116 44 of 4 0.90None
Heart109 64 of 4 0.85None
Fat body118 154 of 4 0.92None
Ovary264 64 of 4 2.00Up
Testis42 14 of 4 0.30Down
Male accessory glands72 54 of 4 0.60Down
Virgin spermatheca166 94 of 4 1.29Up
Mated spermatheca179 114 of 4 1.39Up
Adult carcass78 34 of 4 0.60Down
Larval CNS218 114 of 4 1.69Up
Larval Salivary gland157 104 of 4 1.22None
Larval midgut347 284 of 4 2.69Up
Larval tubule131 24 of 4 1.00None
Larval hindgut197 64 of 4 1.52Up
Larval fat body143 74 of 4 1.10None
Larval trachea141 154 of 4 1.10None
Larval carcass157 74 of 4 1.22Up
S2 cells (growing)202 64 of 4 1.56Up
Whole fly129 64 of 4

Looking for FBgn0033266. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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