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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033277 through 18771 annotations produced 1 hits


Annotation Number : CG14760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033277
Gbrowse : chr2R:4141760-4144241 (+) // 100.0 //
Probeset : 1635420_at
Accessions : protein= NP_610366;, nucleotide= NM_136522;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033277.
Homophila reports that CG14760 is a close match (3e-11) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 3 RNAi stocks for FBgn0033277 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.70None
Head1 00 of 4 1.10None
Eye1 00 of 4 1.79None
Thoracicoabdominal ganglion1 00 of 4 1.30None
Salivary gland3 10 of 4 3.42None
Crop1 00 of 4 1.20None
Midgut2 00 of 4 2.20Up
Tubule1 00 of 4 1.40None
Hindgut1 00 of 4 1.10None
Heart2 00 of 4 2.26Up
Fat body1 00 of 4 1.21None
Ovary0 00 of 4 0.70None
Testis1 00 of 4 1.60None
Male accessory glands1 00 of 4 1.40None
Virgin spermatheca1 00 of 4 1.26None
Mated spermatheca1 00 of 4 1.26None
Adult carcass1 00 of 4 1.40None
Larval CNS0 00 of 4 0.95None
Larval Salivary gland1 00 of 4 1.26None
Larval midgut14 10 of 415.21Up
Larval tubule1 00 of 4 1.50None
Larval hindgut1 00 of 4 1.16None
Larval fat body1 00 of 4 1.50None
Larval trachea1 00 of 4 1.34None
Larval carcass1 00 of 4 1.50None
S2 cells (growing)1 00 of 4 1.42None
Whole fly1 00 of 4

Looking for FBgn0033277. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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