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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033280 through 18771 annotations produced 1 hits


(CG12126):

Annotation Number : CG12126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033280
Gbrowse : chr2R:4150192-4150783 (-) // 100.0 //
Probeset : 1625330_at
Accessions : protein= NP_610369;, nucleotide= NM_136525;
FlyMine data for FBgn0033280.
BioGrid reports that CG12126 interacts with CG1830 CG3283 CG4087 CG9075 CG9392 CG30422 .
VDRC has 2 RNAi stocks for FBgn0033280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye5 ± 21 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 11 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.06Down
Crop4 ± 20 of 4 0.10Down
Midgut3 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.10Down
Heart2 ± 20 of 4 0.04Down
Fat body2 ± 00 of 4 0.03Down
Ovary2 ± 00 of 4 0.00Down
Testis814 ± 214 of 411.50Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut5 ± 10 of 4 0.07Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.06Down
Larval fat body54 ± 243 of 4 0.80None
Larval trachea6 ± 101 of 4 0.10Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)4 ± 10 of 4 0.06Down
Whole fly70 ± 24 of 4

Looking for FBgn0033280. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime