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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033283 through 18771 annotations produced 1 hits


(CG11635):

Annotation Number : CG11635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033283
Gbrowse : chr2R:4245630-4246972 (+) // 100.0 //
Probeset : 1624853_at
Accessions : protein= NP_610372;, nucleotide= NM_136528;
FlyMine data for FBgn0033283.
BioGrid reports that CG11635 interacts with CG17272 CG8942 CG12175 CG13138 CG1391 CG1745 CG17666 CG17935 CG18262 CG18444 CG2257 CG4415 CG4463 CG4759 CG5450 CG7697 CG9572 CG9911 .
VDRC has 3 RNAi stocks for FBgn0033283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 10 of 4 0.10Down
Head5 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.10Down
Salivary gland9 ± 20 of 4 0.08Down
Crop7 ± 21 of 4 0.10Down
Midgut9 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.03Down
Fat body11 ± 60 of 4 0.10Down
Ovary2 ± 10 of 4 0.00Down
Testis1196 ± 284 of 410.10Up
Male accessory glands15 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 20 of 4 0.04Down
Mated spermatheca5 ± 10 of 4 0.05Down
Adult carcass10 ± 70 of 4 0.10Down
Larval CNS6 ± 20 of 4 0.06Down
Larval Salivary gland5 ± 10 of 4 0.05Down
Larval midgut20 ± 10 of 4 0.17Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut10 ± 20 of 4 0.08Down
Larval fat body91 ± 332 of 4 0.80None
Larval trachea5 ± 50 of 4 0.05Down
Larval carcass5 ± 30 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly118 ± 34 of 4

Looking for FBgn0033283. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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