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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033286 through 18771 annotations produced 1 hits


Annotation Number : CG2127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033286
Gbrowse : chr2R:4255843-4257543 (-) // 100.0 //
Probeset : 1624202_a_at
Accessions : protein= NP_610375; /// NP_724676;, nucleotide= NM_136531; /// NM_165607;
FlyMine data for FBgn0033286.
BDGP gene expression has embryonic in situ data for CG2127: 2 pix of staining in 1 body parts.
BioGrid reports that CG2127 interacts with CG8942 .
VDRC has 3 RNAi stocks for FBgn0033286 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye3 10 of 4 0.00Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland5 10 of 4 0.01Down
Crop3 10 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule5 10 of 4 0.00Down
Hindgut6 10 of 4 0.00Down
Heart3 00 of 4 0.00Down
Fat body8 20 of 4 0.01Down
Ovary4 10 of 4 0.00Down
Testis3384 1234 of 4 3.80Up
Male accessory glands7 30 of 4 0.00Down
Virgin spermatheca6 20 of 4 0.01Down
Mated spermatheca5 20 of 4 0.01Down
Adult carcass31 71 of 4 0.00Down
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland4 10 of 4 0.00Down
Larval midgut10 20 of 4 0.01Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut3 10 of 4 0.00Down
Larval fat body653 3404 of 4 0.70None
Larval trachea23 391 of 4 0.03Down
Larval carcass8 10 of 4 0.01Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly884 754 of 4

Looking for FBgn0033286. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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