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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033297 through 18771 annotations produced 1 hits



(CG8690):

Annotation Number : CG8690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033297
Gbrowse : chr2R:4359469-4361448 (+) // 100.0 //
Probeset : 1624914_at
Accessions : protein= NP_610384;, nucleotide= NM_136540;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004558 // alpha-glucosidase activity // infer
FlyMine data for FBgn0033297.
BDGP gene expression has embryonic in situ data for CG8690: 4 pix of staining in 1 body parts.
Homophila reports that CG8690 is a close match (5e-93) to human gene ATR1;D2H;NBAT;SLC3A1 (NP_000332), a gene associated with Cystinuria, 220100 (3);Homozygous 2p16 deletion syndrome, 606407 (3).
VDRC has 2 RNAi stocks for FBgn0033297 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop0 ± 00 of 4 0.00Down
Midgut2903 ± 514 of 418.40Up
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body3 ± 20 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 20 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.01Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut420 ± 1134 of 4 2.66None
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body14 ± 53 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly157 ± 114 of 4

Looking for FBgn0033297. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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