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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033302 through 18771 annotations produced 1 hits



():

Annotation Number : CG8687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033302
Gbrowse : chr2R:4451848-4453442 (-) // 100.0 //
Probeset : 1634623_a_at
Accessions : protein= , nucleotide=
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033302.
Homophila reports that CG8687 is a close match (1e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.30None
Head24 ± 44 of 4 1.30None
Eye3 ± 11 of 4 0.18Down
Thoracicoabdominal ganglion8 ± 11 of 4 0.40None
Salivary gland30 ± 43 of 4 1.57None
Crop214 ± 124 of 411.00Up
Midgut118 ± 104 of 4 6.10Up
Tubule123 ± 194 of 4 6.30Up
Hindgut80 ± 74 of 4 4.10Up
Heart3 ± 10 of 4 0.20None
Fat body12 ± 42 of 4 0.62None
Ovary6 ± 02 of 4 0.30None
Testis5 ± 11 of 4 0.30None
Male accessory glands11 ± 31 of 4 0.60None
Virgin spermatheca36 ± 24 of 4 1.90Up
Mated spermatheca55 ± 84 of 4 2.85Up
Adult carcass21 ± 22 of 4 1.10None
Larval CNS6 ± 13 of 4 0.33None
Larval Salivary gland11 ± 23 of 4 0.59None
Larval midgut206 ± 394 of 410.59Up
Larval tubule59 ± 94 of 4 3.10Up
Larval hindgut41 ± 74 of 4 2.14Up
Larval fat body30 ± 74 of 4 1.60None
Larval trachea7 ± 41 of 4 0.38None
Larval carcass10 ± 11 of 4 0.56None
S2 cells (growing)24 ± 24 of 4 1.24None
Whole fly19 ± 53 of 4

Looking for FBgn0033302. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime