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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033304 through 18771 annotations produced 1 hits



Cyp6a13 (Cyp6a13):

Annotation Number : CG2397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033304
Gbrowse : chr2R:4458006-4459650 (+) // 100.0 //
Probeset : 1635110_at
Accessions : protein= NP_610390;, nucleotide= NM_136546;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033304.
BDGP gene expression has embryonic in situ data for Cyp6a13: 9 pix of staining in 3 body parts.
Homophila reports that CG2397 is a close match (1e-11) to human gene CYP1B1;GLC3A (NP_000095), a gene associated with Glaucoma 3A, primary congenital, 231300 (3);Glaucoma, early-onset, digenic (3);Glaucoma, primary open angle, adult-onset, 137760 (3);Glaucoma, primary open angle, juvenile-onset, 137750 (3);Peters anomaly, 604229 (3).
BioGrid reports that CG2397 interacts with CG5558 .
VDRC has 3 RNAi stocks for FBgn0033304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 54 of 4 2.10Up
Head248 154 of 4 2.60Up
Eye145 34 of 4 1.55Up
Thoracicoabdominal ganglion323 284 of 4 3.40Up
Salivary gland275 514 of 4 2.94Up
Crop147 74 of 4 1.60Up
Midgut303 44 of 4 3.20Up
Tubule406 314 of 4 4.30Up
Hindgut227 34 of 4 2.40Up
Heart396 174 of 4 4.22Up
Fat body218 224 of 4 2.32Up
Ovary34 24 of 4 0.40Down
Testis28 14 of 4 0.30Down
Male accessory glands365 64 of 4 3.90Up
Virgin spermatheca239 114 of 4 2.55Up
Mated spermatheca246 124 of 4 2.63Up
Adult carcass229 74 of 4 2.40Up
Larval CNS29 74 of 4 0.32Down
Larval Salivary gland110 164 of 4 1.18None
Larval midgut850 934 of 4 9.06Up
Larval tubule1018 374 of 410.80Up
Larval hindgut552 694 of 4 5.88Up
Larval fat body213 644 of 4 2.30None
Larval trachea290 274 of 4 3.10Up
Larval carcass140 244 of 4 1.49None
S2 cells (growing)13 04 of 4 0.14Down
Whole fly93 34 of 4

Looking for FBgn0033304. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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