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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033309 through 18771 annotations produced 1 hits



(CG8735):

Annotation Number : CG8735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033309
Gbrowse : chr2R:4485032-4487436 (-) // 100.0 //
Probeset : 1622944_at
Accessions : protein= NP_610395;, nucleotide= NM_136551;
FlyMine data for FBgn0033309.
VDRC has 2 RNAi stocks for FBgn0033309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 ± 24 of 4 0.80Down
Head104 ± 24 of 4 0.60Down
Eye144 ± 74 of 4 0.84Down
Thoracicoabdominal ganglion106 ± 54 of 4 0.60Down
Salivary gland134 ± 64 of 4 0.78Down
Crop203 ± 34 of 4 1.20Up
Midgut87 ± 24 of 4 0.50Down
Tubule40 ± 24 of 4 0.20Down
Hindgut107 ± 24 of 4 0.60Down
Heart121 ± 44 of 4 0.71Down
Fat body89 ± 94 of 4 0.52Down
Ovary247 ± 04 of 4 1.40Up
Testis368 ± 84 of 4 2.10Up
Male accessory glands267 ± 64 of 4 1.60Up
Virgin spermatheca48 ± 14 of 4 0.28Down
Mated spermatheca53 ± 34 of 4 0.31Down
Adult carcass108 ± 44 of 4 0.60Down
Larval CNS144 ± 74 of 4 0.84Down
Larval Salivary gland501 ± 184 of 4 2.91Up
Larval midgut102 ± 54 of 4 0.59Down
Larval tubule114 ± 54 of 4 0.70Down
Larval hindgut160 ± 34 of 4 0.93Down
Larval fat body181 ± 184 of 4 1.10None
Larval trachea326 ± 94 of 4 1.90Up
Larval carcass348 ± 54 of 4 2.02Up
S2 cells (growing)335 ± 44 of 4 1.95Up
Whole fly172 ± 14 of 4

Looking for FBgn0033309. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime