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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033313 through 18771 annotations produced 1 hits



Cirl (Cirl):

Annotation Number : CG8639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033313
Gbrowse : chr2R:4503612-4512708 (+) // 100.0 //
Probeset : 1640640_at
Accessions : protein= NP_001137620; /// NP_001163090; /// NP_610397;, nucleotide= NM_001144148; /// NM_001169619; /// NM_136553;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // non-traceable autho
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0033313.
Homophila reports that CG8639 is a close match (4e-18) to human gene GPR126;STQTL1;VIGR (NP_940971), a gene associated with [Stature QTL1], 606255 (3).
TRiP has 2 RNAi stocks for FBgn0033313 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain712 ± 164 of 436.40Up
Head87 ± 54 of 4 4.50Up
Eye56 ± 34 of 4 2.91Up
Thoracicoabdominal ganglion478 ± 214 of 424.50Up
Salivary gland124 ± 44 of 4 6.36Up
Crop24 ± 04 of 4 1.20None
Midgut11 ± 20 of 4 0.60Down
Tubule18 ± 13 of 4 1.00None
Hindgut19 ± 04 of 4 1.00None
Heart10 ± 04 of 4 0.52Down
Fat body14 ± 12 of 4 0.73None
Ovary7 ± 03 of 4 0.40Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands63 ± 34 of 4 3.30Up
Virgin spermatheca26 ± 42 of 4 1.35None
Mated spermatheca17 ± 33 of 4 0.90None
Adult carcass16 ± 31 of 4 0.80None
Larval CNS449 ± 464 of 423.01Up
Larval Salivary gland14 ± 13 of 4 0.75None
Larval midgut3 ± 00 of 4 0.16Down
Larval tubule24 ± 14 of 4 1.20None
Larval hindgut23 ± 24 of 4 1.19None
Larval fat body21 ± 31 of 4 1.10None
Larval trachea21 ± 54 of 4 1.08None
Larval carcass19 ± 04 of 4 1.00None
S2 cells (growing)19 ± 24 of 4 0.98None
Whole fly19 ± 24 of 4

Looking for FBgn0033313. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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