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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033316 through 18771 annotations produced 1 hits



(CG14749):

Annotation Number : CG14749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033316
Gbrowse : chr2R:4515381-4517691 (+) // 100.0 //
Probeset : 1632233_at
Accessions : protein= NP_610400;, nucleotide= NM_136556;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annota
FlyMine data for FBgn0033316.
BDGP gene expression has embryonic in situ data for CG14749: 4 pix of staining in 1 body parts.
Homophila reports that CG14749 is a close match (4e-37) to human gene GLE1;GLE1L;LCCS;LCCS1 (NP_001490), a gene associated with Arthrogryposis, lethal, with anterior horn cell disease, 611890 (3);Lethal congenital contracture syndrome 1, 253310 (3).
TRiP has 1 RNAi stocks for FBgn0033316 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033316 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 24 of 4 0.80Down
Head60 34 of 4 0.40Down
Eye54 14 of 4 0.37Down
Thoracicoabdominal ganglion133 34 of 4 0.90None
Salivary gland96 134 of 4 0.66Down
Crop90 24 of 4 0.60Down
Midgut68 34 of 4 0.50Down
Tubule63 34 of 4 0.40Down
Hindgut60 04 of 4 0.40Down
Heart38 14 of 4 0.27Down
Fat body53 24 of 4 0.37Down
Ovary320 94 of 4 2.20Up
Testis117 94 of 4 0.80None
Male accessory glands80 24 of 4 0.60Down
Virgin spermatheca59 34 of 4 0.41Down
Mated spermatheca71 24 of 4 0.49Down
Adult carcass63 44 of 4 0.40Down
Larval CNS141 104 of 4 0.98None
Larval Salivary gland81 44 of 4 0.57Down
Larval midgut68 44 of 4 0.48Down
Larval tubule58 24 of 4 0.40Down
Larval hindgut58 54 of 4 0.41Down
Larval fat body68 44 of 4 0.50Down
Larval trachea78 04 of 4 0.54Down
Larval carcass55 24 of 4 0.38Down
S2 cells (growing)109 34 of 4 0.76Down
Whole fly144 54 of 4

Looking for FBgn0033316. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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