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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033317 through 18771 annotations produced 1 hits



(CG8635):

Annotation Number : CG8635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033317
Gbrowse : chr2R:4517698-4519467 (-) // 100.0 //
Probeset : 1639198_at
Accessions : protein= NP_610401;, nucleotide= NM_136557;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0033317.
BDGP gene expression has embryonic in situ data for CG8635: 14 pix of staining in 15 body parts.
VDRC has 2 RNAi stocks for FBgn0033317 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 ± 74 of 4 0.60Down
Head147 ± 134 of 4 0.50Down
Eye141 ± 34 of 4 0.49Down
Thoracicoabdominal ganglion160 ± 94 of 4 0.60Down
Salivary gland197 ± 154 of 4 0.69Down
Crop188 ± 84 of 4 0.70Down
Midgut184 ± 54 of 4 0.60Down
Tubule166 ± 124 of 4 0.60Down
Hindgut151 ± 64 of 4 0.50Down
Heart131 ± 44 of 4 0.46Down
Fat body218 ± 534 of 4 0.76None
Ovary490 ± 74 of 4 1.70Up
Testis247 ± 114 of 4 0.90Down
Male accessory glands453 ± 134 of 4 1.60Up
Virgin spermatheca232 ± 194 of 4 0.81None
Mated spermatheca235 ± 134 of 4 0.82Down
Adult carcass161 ± 74 of 4 0.60Down
Larval CNS245 ± 314 of 4 0.86None
Larval Salivary gland397 ± 134 of 4 1.39Up
Larval midgut113 ± 74 of 4 0.40Down
Larval tubule205 ± 84 of 4 0.70Down
Larval hindgut205 ± 204 of 4 0.72Down
Larval fat body194 ± 44 of 4 0.70Down
Larval trachea241 ± 274 of 4 0.84Down
Larval carcass269 ± 254 of 4 0.94None
S2 cells (growing)302 ± 94 of 4 1.06None
Whole fly286 ± 44 of 4

Looking for FBgn0033317. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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