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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033320 through 18771 annotations produced 1 hits



(CG8586):

Annotation Number : CG8586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033320
Gbrowse : chr2R:4581243-4583301 (-) // 100.0 //
Probeset : 1624821_at
Accessions : protein= NP_610402;, nucleotide= NM_136558;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033320.
Homophila reports that CG8586 is a close match (3e-13) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 4 RNAi stocks for FBgn0033320 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.20Down
Head560 ± 364 of 4 5.50Up
Eye333 ± 314 of 4 3.28Up
Thoracicoabdominal ganglion24 ± 34 of 4 0.20Down
Salivary gland81 ± 64 of 4 0.80Down
Crop299 ± 114 of 4 2.90Up
Midgut4 ± 00 of 4 0.00Down
Tubule10 ± 11 of 4 0.10Down
Hindgut162 ± 54 of 4 1.60Up
Heart398 ± 254 of 4 3.91Up
Fat body565 ± 104 of 4 5.55Up
Ovary3 ± 00 of 4 0.00Down
Testis6 ± 01 of 4 0.10Down
Male accessory glands6 ± 30 of 4 0.10Down
Virgin spermatheca884 ± 284 of 4 8.68Up
Mated spermatheca664 ± 344 of 4 6.53Up
Adult carcass567 ± 154 of 4 5.60Up
Larval CNS4 ± 10 of 4 0.05Down
Larval Salivary gland6 ± 10 of 4 0.06Down
Larval midgut10 ± 10 of 4 0.10Down
Larval tubule6 ± 11 of 4 0.10Down
Larval hindgut21 ± 14 of 4 0.21Down
Larval fat body1083 ± 1934 of 410.60Up
Larval trachea15 ± 53 of 4 0.15Down
Larval carcass18 ± 13 of 4 0.18Down
S2 cells (growing)5 ± 00 of 4 0.05Down
Whole fly101 ± 34 of 4

Looking for FBgn0033320. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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